Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01920 ATGGCCGTGGAATTCATGATGGGGTACAGGAACGACACTTTCGCGGAGGATAATGCGGTTCGTGAAGCTGCGTCGGGGCTAGAGAGCGTCGAGAAACTCATCAAGTTGCTGTCGCATACTCAACAACAATACCAGACAACCTCAAAGTCTTCCATGGAAAACATCGACACCGACTACACAGCTGTCGCTGACGTCGCGGTTTCTAAGTTCAAGAAGGTCATTTCGCTTCTGGGCCGCACCAGAACCGGTCACGCGCGTTTTAGAAGAGCCCCTGTGCCTGTGCCTGTGCCTGTGGCTTCACCTCCACCTTCGGAACCGAGAGTCTACCGTGCTACGCCGCTGCAGCAGATCCCGCCACCCACCCTTCACACTCACTCTGTCACTGACCACTCTCTGATCCCCAAAATTGAGAGAAAGGACTCTTCCAAGACCATTAATTTCTCCTATTCAAATTCGTTTGTCTCCTCCCTCACCGCTGGCGATACCGACACTAAACAACCGTGCTCGTCGTCGCCGTCGCCGGCCACGGCTTTTCAGATCACGAATCTCTCTCAGGTCTCCTCCGCCGGAAAGCCTCCTCTTTCGTCCTCTTCGTTGAAGAGGAAGTGTAGCTCTGAGAACTTGGGTTCTGCTAAGTGTGGCAGTTCCTCTAGCCGATGCCATTGTTCAAAGAAGAGCAGAAAAATGAGGCAGAAGAGGGTGGTGAGGGTACCGGCAATAAGCTTGAAGATGGCTGATATTCCACCAGACGATTATTCTTGGAGGAAATACGGACAGAAACCCATTAAAGGATCCCCCCATCCAAGAGGTTATTACAAGTGCAGCAGTGTTAGAGGGTGTCCAGCGCGCAAACACGTAGAGAGGGCTCTGGATGATCCATCTATGTTGGTAGTCACCTATGAAGGAGAGCACAATCATACACTCTCTGCAGCCGAAGCTACTAATCTCATCCTAGAATCCTCTTAA 966 0.5155 MAVEFMMGYRNDTFAEDNAVREAASGLESVEKLIKLLSHTQQQYQTTSKSSMENIDTDYTAVADVAVSKFKKVISLLGRTRTGHARFRRAPVPVPVPVASPPPSEPRVYRATPLQQIPPPTLHTHSVTDHSLIPKIERKDSSKTINFSYSNSFVSSLTAGDTDTKQPCSSSPSPATAFQITNLSQVSSAGKPPLSSSSLKRKCSSENLGSAKCGSSSSRCHCSKKSRKMRQKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHTLSAAEATNLILESS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01920 321 Pfam WRKY DNA -binding domain 250 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma01g01920 321 Pfam Plant zinc cluster domain 200 246 IPR018872 -
Gma01g01920 321 ProSiteProfiles WRKY domain profile. 243 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma01g01920 321 SMART WRKY_cls 248 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma01g01920 321 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 13 321 IPR044810 GO:0003700
Gma01g01920 321 SUPERFAMILY WRKY DNA-binding domain 245 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma01g01920 321 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 13 321 - -
Gma01g01920 321 Gene3D WRKY domain 233 309 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01920 Gma-Chr1 54730036 54732795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01920 1 312 WRKY Transcription Factor Family AT2G24570 44.152 1.67e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gma01g01920 WRKY 3.2e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01920 01 54730036 54732795 Gma11g00485 11 4054124 4055815 GST
Gma01g01920 01 54730036 54732795 Gma17g00539 17 4422176 4424101 PCT
Gma01g01920 01 54730036 54732795 Gma13g00822 13 22527082 22528331 PCT
Gma17g01555 17 15889389 15890924 Gma01g01920 01 54730036 54732795 PCT
Gma05g00951 05 27573150 27575137 Gma01g01920 01 54730036 54732795 PCT