Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01914 aTGGAGAGTGAAGGAAGAAGAGAAGGAGGAGAGAGAGAAACAACAGCAGCGACGAGGAAGGTGGAGGGTGCTGAGAGAAGATACAAAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAAATTAGAGAACCCAATAAGCGTTCAAGGATTTGGCTCGGTTCCTATTCTACCCCTGTCGCCGCCGCACGTGCCTACGACACGGCCGTCTTTTACCTCCGGGGACCCTCCGCACGCCTCAACTTCCCGGAGCTTCTCGTCAGAGAAGGCCCGGCCGCCCTAGTCGCCGGCTGCGACATGTCAGCGGCTTCTATTAGGAAGAAGGCCACCGAGGTCGGTGCTAGAGTCGATGCTCTTCAGGCAACCCTTCACCACCACTACGTGCCCCCGCGGCAACTTCTCTCTGGCGGTGATGGTGGGTCCGGGGATTTCCCGGTGCGGGTTGTTGACCTGAATAAGATGCCTGAACCCGAGAGTTCGGACTGTGAGTGGGATGTGAATTGA 507 0.572 MESEGRREGGERETTAATRKVEGAERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLVREGPAALVAGCDMSAASIRKKATEVGARVDALQATLHHHYVPPRQLLSGGDGGSGDFPVRVVDLNKMPEPESSDCEWDVN 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01914 168 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Gma01g01914 168 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Gma01g01914 168 PRINTS Ethylene responsive element binding protein signature 66 86 IPR001471 GO:0003700|GO:0006355
Gma01g01914 168 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Gma01g01914 168 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Gma01g01914 168 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Gma01g01914 168 MobiDBLite consensus disorder prediction 1 22 - -
Gma01g01914 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 12 162 - -
Gma01g01914 168 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Gma01g01914 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 12 162 - -
Gma01g01914 168 CDD AP2 27 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01914 Gma-Chr1 54687613 54688506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01914 25 162 AP2-EREBP Transcription Factor Family AT3G50260 65.217 3.30e-55 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma01g01914 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01914 K09286 - gmx:100527066 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01914 01 54687613 54688506 Gma11g00490 11 4088754 4089287 GST
Gma01g01914 01 54687613 54688506 Gma17g01564 17 16108889 16110066 PCT
Gma17g01564 17 16108889 16110066 Gma01g01914 01 54687613 54688506 PCT