Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01912 ATGTGGGATCTGAATGACTCCCCCGATCAGAGAAAGGACTACGAGTCTGAAGGCTGTTCTTCTTCTCTGTATGATGATAAAGGCAAGAGGGTGGCATCTGTTTCCAATTCAAGCTCCTCTGCGGTGGTCGTTGAAGATGGATCGGAAGAAGAAGACAGTGAAAGAGGTGGAAGCAGAACATTGGATAACAAGAAAACCAACAAAATATTCGGCTTCTCTGTAGCTCATGATGACAGTGACCACCCACCCGTCACTCATCAGTTTTTTCCGGTTGAGGACTCCGAACTTCCAGTCACCGCTGCCGCCGCCGCGGCCGGAAGCTCCTTCCCACGTGCTCACTGGGTAGGCGTCAAATTTTGTCAATCGGAAACACCCGGCGCCGGAAAAGCAGTGAAAGTGTCGGAGCCGATGAAGAAAAGCCGCCGAGGACCACGCTCGCGCAGCTCACAGTATCGAGGAGTTACTTTCTACAGAAGAACCGGTAGATGGGAATCTCATATATGGGATTGTGGAAAGCAAGTATATTTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCGTATGATAGAGCAGCTATTAAATTCCGGGGAGTGGAGGCAGACATCAACTTCAACATCGAAGACTATGAGGAAGACTTGAAGCAGATGACCAATTTAACTAAGGAGGAGTTTGTGCATGTACTTCGCCGACAAAGCACTGGATTTCCCAGAGGAAGCTCCAAATATAGAGGCGTAACTTTGCATAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTGGGCAAAAAGTATGTCTATCTGGGTTTGTTTGACACCGAGATTGAAGCTGCAAGGGCATATGATAAAGCAGCAATAAAATGCAATGGCAAAGAGGCTGTCACCAATTTTGATCCCAGCATCTATGATGGTGAGCTTAATTCTGAATCCTCAGGAGGTGTAGCTGCAGATCACAATTTGGATTTGAGTTTGGGTAATTTGATCTCTAAACATAGCAATAGTCAATCATCGAGGAATCACTTCCCAAATTCTGCAACCGATCAGCATATGCCACCTGAATCTAATTGGCAGAGTGGGGGAAGCAAGCCTAAGGTTCATCTGGTTAATATACTTCCAAAACCATGTGGTAGAAGCAACATGGAAGCCTATGGGCAAGGTGAGAGTGAAACCTTGAGGTTGCTAAGCCAAACTCACCTTCAATCCCCAACCACTAAAGAAATGCACAGATATGGTCCGTATAGGTCGCCAGCAGAGCCACAAATGCCTCACAATTTCGCACATCATCTTCACCAACCAAGTTTTCATGTTCCTAGCAGCAGCAGCAACCGAGGCCGTATTGGAAGCGATCTTTCGTTATCAATGTCCGATCAACAACAATGGCAACAAGCCGGGCCTCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACAGCAAATTAGACCCTCCCAAGGTTGGCTGCAGAAAAATGGGTTCCACTCTCTCATGAGACCCTCATGA 1509 0.4725 MWDLNDSPDQRKDYESEGCSSSLYDDKGKRVASVSNSSSSAVVVEDGSEEEDSERGGSRTLDNKKTNKIFGFSVAHDDSDHPPVTHQFFPVEDSELPVTAAAAAAGSSFPRAHWVGVKFCQSETPGAGKAVKVSEPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDGELNSESSGGVAADHNLDLSLGNLISKHSNSQSSRNHFPNSATDQHMPPESNWQSGGSKPKVHLVNILPKPCGRSNMEAYGQGESETLRLLSQTHLQSPTTKEMHRYGPYRSPAEPQMPHNFAHHLHQPSFHVPSSSSNRGRIGSDLSLSMSDQQQWQQAGPPHLLATAAASSGFPQQIRPSQGWLQKNGFHSLMRPS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01912 502 ProSiteProfiles AP2/ERF domain profile. 242 299 IPR001471 GO:0003700|GO:0006355
Gma01g01912 502 MobiDBLite consensus disorder prediction 330 366 - -
Gma01g01912 502 MobiDBLite consensus disorder prediction 431 465 - -
Gma01g01912 502 MobiDBLite consensus disorder prediction 434 465 - -
Gma01g01912 502 SUPERFAMILY DNA-binding domain 149 207 IPR016177 GO:0003677
Gma01g01912 502 MobiDBLite consensus disorder prediction 330 363 - -
Gma01g01912 502 SMART rav1_2 150 212 IPR001471 GO:0003700|GO:0006355
Gma01g01912 502 SMART rav1_2 242 305 IPR001471 GO:0003700|GO:0006355
Gma01g01912 502 PRINTS Ethylene responsive element binding protein signature 243 254 IPR001471 GO:0003700|GO:0006355
Gma01g01912 502 PRINTS Ethylene responsive element binding protein signature 281 301 IPR001471 GO:0003700|GO:0006355
Gma01g01912 502 MobiDBLite consensus disorder prediction 1 24 - -
Gma01g01912 502 MobiDBLite consensus disorder prediction 128 150 - -
Gma01g01912 502 CDD AP2 150 207 IPR001471 GO:0003700|GO:0006355
Gma01g01912 502 Pfam AP2 domain 241 290 IPR001471 GO:0003700|GO:0006355
Gma01g01912 502 Pfam AP2 domain 150 198 IPR001471 GO:0003700|GO:0006355
Gma01g01912 502 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 500 - -
Gma01g01912 502 MobiDBLite consensus disorder prediction 1 64 - -
Gma01g01912 502 Gene3D AP2/ERF domain 149 208 IPR036955 GO:0003700|GO:0006355
Gma01g01912 502 Gene3D AP2/ERF domain 241 300 IPR036955 GO:0003700|GO:0006355
Gma01g01912 502 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 500 - -
Gma01g01912 502 CDD AP2 241 301 IPR001471 GO:0003700|GO:0006355
Gma01g01912 502 SUPERFAMILY DNA-binding domain 241 301 IPR016177 GO:0003677
Gma01g01912 502 ProSiteProfiles AP2/ERF domain profile. 150 206 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01912 Gma-Chr1 54652859 54656513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01912 1 339 AP2-EREBP Transcription Factor Family AT4G36920 69.122 7.74e-139 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gma01g01912 AP2 3.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01912 K09284 - gmx:100801975 958.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01912 01 54652859 54656513 Gma11g00492 11 4107752 4111440 GST
Gma01g01912 01 54652859 54656513 Gma17g01567 17 16240278 16244669 PCT
Gma01g01912 01 54652859 54656513 Gma05g00933 05 24511252 24513247 PCT
Gma17g01567 17 16240278 16244669 Gma01g01912 01 54652859 54656513 PCT
Gma05g00933 05 24511252 24513247 Gma01g01912 01 54652859 54656513 PCT