Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01908 ATGGCGTCGAAGCCTTCGCCTTCGCCCTCGCCCTCTTCTTCCAGATCAGAGCCTCTCGTCGATCCCTCCGCGAATAAAGTGGAGGGTTCAAGTCCGACTGCTAAAGATGTGCTGCTGGTTATTGATTCTTTGAAGAAACAAGTTGCTGCAGAACGAGTTGTTTATGTAAAGAAAAGAATAGAGGAAAACAGACAGAAGCTGGTTGGTGTCACTAACCATCTCTGCACAATGTCAACGGAGAGAAGGAACTGCAGCATTACTGATACGAATAGAAGTCTGGACCTACTGACAAAGAGGCAAAAAGATGCAATTGATATGCACAATGGTGTTCATGCGAGTAATGGTGACGTGGAGAGCAACGGCTATCATGATGATAACCATGGTTCTACAGCAGTTCTTCTAGGGTCTAATGTTGCCGTAAAGAATGCTGTTCGTCCCATCAAGTTACCTGAAGTAAAAAAATTGCCTCCTTACACTACATGGATTTTTCTGGACAGGTTAAATCAAAGAATGACCGAGGATCAGTCAGTTGTAGGCCGGAGACGAATTTATTATGATCAGAATGGTGGAGAAGCACTGATTTGCAGTGACAGTGAAGAGGAAACTATGGATGATGAAGAGGAGAAAAGAGAATTCATAGAATCAGAAGATTATATACTTCGCATGACTGTCAAAGAGTTTGGTTTAACTGACATTGTTCTGGAGTCGTTGGCTCAGTGTTTTTCTAGAAACATCAGTGAAATTAAGGCAAAGTATGAAACCCTCAGTATTCATGACAATGCTGGCGGGTGTTCCAAGGCTGGAGATTCTGAAGAGAATTCTCAAAGTGGCAATTTTTTTCTGGAAAAGGATCTTGAAGCAGCTCTTGACTCTTTTGACAACCTCTTTTGTCGACGATGTCTTGTTTTCGATTGTAGATTACATGGATGTTCACAGGATCTTGTCTTCCCTGCTGAGAAGCAACCTACATGGAACCCTCCTGATACCGAAAATGCACCCTGTGGGCCAAATTGTTTCCGATCGGTACTTAAGTCAGAAAGATTTGCCAAAACATCCTCTGCCCAGGCTGATGAAGAGAAGTCCTCTGGTGGTGCTTTATCTAGGAAGAAGTCTTCTGCTAAGAGGCGGATAAAATGTAGCCAAAGTGAAAGTGCTTCATCTAATGCAAAGAACATATCAGAGAGTAGTGACTCAGAGAATGGTCCTGGACGAGATGCTGTCTCAGCCTCCCGCTCAGCACCTCCTAAAACTAAACCTGTGGGGAAAGGTGGAATTGGTAAAAGGAACAGTAAGCGAGTGGCAGAACGAGTCCTAGTATGCATGCAGAAACGGCAGAAGAAAACAATGGTTTCTGATTCTGATTCCATTAGTGAAGCTCTTGACCGTTCATCGAATGATATGGTCACTGACCCACATGCCATGAGCAGTGAAGACAACATGAGGAAAGAAGAGTTTGTAGATGACAATGTTTGTAAACCAGAAATCACAGATAATAAATCTTGGAAAGCTCTTGAAAAGGGGCTTTTAGAGAAAGGAATGGAGATTTTTGGTAGAAACAGTTGCTTAATAGCTAGGAATCTCTTAAATGGCCTAAAGACATGTTGGGATGTTTTCCAATACATAAATTGTGAAGATGGAAAGATGTCTGGTCCTCCTGGGGATGTTGCAAATTCCCTCATGGACTGCTATTCCAAGGGTACTAATGAAGTGAGACGAAGGTCTAGATTCTTACGTAGAAGAGGAAGAGTTCGTCGATTGAAGTACACCTGGAAATCTGCTGCTTATCATTCAATTAGGAAAAGGATTACAGAGAGAAAGGATCAGCCTTGCCGGCAGTATAATCCATGTGGTTGCCAATCGGCTTGTGGAAAGCAGTGTCCTTGTCTTCAAAATGGAACCTGCTGTGAGAAGTACTGTGGATGCCCCAAGAGCTGCAAGAATCGATTTCGTGGCTGTCATTGTGCTAAGAGTCAATGCAGAAGTCGTCAATGTCCATGTTTTGCTGCAGATAGGGAATGTGATCCAGATGTTTGTAGGAATTGTTGGGTCAGTTGTGGCGATGGTACACTAGGGATTCCTAGCCAAAGAGGGGATAATTATGAATGTAGAAACATGAAGCTTCTTCTCAAACAGCAGCAAAGGGTTCTTCTTGGAAGGTCTGATATATCAGGTTGGGGAGCCTTCTTAAAGAATAGTGTTGGTAAGCATGAATACCTTGGAGAGTATACTGGAGAGTTGATTTCTCATCGGGAAGCAGATAAGCGAGGAAAGATATATGACCGTGAAAATTCATCTTTTCTCTTCAATTTGAACGATCAGGCAAGCTTTTATGACTTTTTTGTTCTTGATGCTTACCGAAAGGGTGATAAATTGAAGTTTGCGAACCATTCTCCTGATCCAAATTGCTATGCAAAGGTTATTATGGTTGCCGGAGATCATAGGGTAGGCATTTTTGCCAAGGAACGGATTTGTGCCGGGGAGGAGCTGTTCTATGATTATCGTTATGAGCCAGATAGGGCTCCTGCGTGGGCTCGGAAGCCAGAGGCATCTGGATCAAAAAAAGAGGACGGTGCTCCTTCAAGTGGTCGTGCAAAGAAGCTTGCTTAA 2607 0.4319 MASKPSPSPSPSSSRSEPLVDPSANKVEGSSPTAKDVLLVIDSLKKQVAAERVVYVKKRIEENRQKLVGVTNHLCTMSTERRNCSITDTNRSLDLLTKRQKDAIDMHNGVHASNGDVESNGYHDDNHGSTAVLLGSNVAVKNAVRPIKLPEVKKLPPYTTWIFLDRLNQRMTEDQSVVGRRRIYYDQNGGEALICSDSEEETMDDEEEKREFIESEDYILRMTVKEFGLTDIVLESLAQCFSRNISEIKAKYETLSIHDNAGGCSKAGDSEENSQSGNFFLEKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPTWNPPDTENAPCGPNCFRSVLKSERFAKTSSAQADEEKSSGGALSRKKSSAKRRIKCSQSESASSNAKNISESSDSENGPGRDAVSASRSAPPKTKPVGKGGIGKRNSKRVAERVLVCMQKRQKKTMVSDSDSISEALDRSSNDMVTDPHAMSSEDNMRKEEFVDDNVCKPEITDNKSWKALEKGLLEKGMEIFGRNSCLIARNLLNGLKTCWDVFQYINCEDGKMSGPPGDVANSLMDCYSKGTNEVRRRSRFLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQSACGKQCPCLQNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWVSCGDGTLGIPSQRGDNYECRNMKLLLKQQQRVLLGRSDISGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQASFYDFFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERICAGEELFYDYRYEPDRAPAWARKPEASGSKKEDGAPSSGRAKKLA 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01908 868 MobiDBLite consensus disorder prediction 843 868 - -
Gma01g01908 868 SMART set_7 713 840 IPR001214 GO:0005515
Gma01g01908 868 Pfam CXC domain 651 682 IPR041355 -
Gma01g01908 868 MobiDBLite consensus disorder prediction 452 472 - -
Gma01g01908 868 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 12 460 IPR045318 GO:0006338|GO:0018024
Gma01g01908 868 SMART CXC_2 647 684 IPR033467 -
Gma01g01908 868 Coils Coil 196 216 - -
Gma01g01908 868 MobiDBLite consensus disorder prediction 1 31 - -
Gma01g01908 868 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 868 IPR025778 GO:0031519
Gma01g01908 868 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 460 866 IPR045318 GO:0006338|GO:0018024
Gma01g01908 868 MobiDBLite consensus disorder prediction 1 30 - -
Gma01g01908 868 MobiDBLite consensus disorder prediction 350 428 - -
Gma01g01908 868 Pfam SET domain 724 833 IPR001214 GO:0005515
Gma01g01908 868 MobiDBLite consensus disorder prediction 843 861 - -
Gma01g01908 868 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 460 866 - -
Gma01g01908 868 CDD SET_EZH 713 835 - -
Gma01g01908 868 SUPERFAMILY SET domain 587 839 IPR046341 -
Gma01g01908 868 MobiDBLite consensus disorder prediction 448 479 - -
Gma01g01908 868 MobiDBLite consensus disorder prediction 378 405 - -
Gma01g01908 868 Gene3D SET domain 613 836 IPR046341 -
Gma01g01908 868 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 12 460 - -
Gma01g01908 868 ProSiteProfiles SET domain profile. 713 834 IPR001214 GO:0005515
Gma01g01908 868 ProSiteProfiles CXC domain profile. 599 698 IPR026489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01908 Gma-Chr1 54609719 54619170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01908 702 837 C2H2 Transcription Factor Family AT2G23740 27.211 5.17e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gma01g01908 SET 3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01908 - K11430 gmx:100799832 1697.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01908 01 54609719 54619170 Gma11g00495 11 4137308 4146759 GST