Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01904 ATGGGTGACATGTACCACTTTGACAAGAACCTCTCTTCGCAAGACGAAATCTCACTTTTTCTGCGTCAGATTCTGCTCCGTTCATCTCCACCTTCTTCTTCTTCATCTTCCCGCCCCATGCCTACTGTATCCTGCACCTCTAACGTTGCTCACCAAAACGTAAATGCACACCCTTCTTTCACAGCGTCGCAGCTCCAAGATGGGAAGATCTTGGCCCTTGATTCCACCGCTTCTTTTGCCTCGGGTTCTGCTGCTTGCAGCTCCTTCAAGGGCCAGGGTGCTTCTGCTGCAAATGTGTCTTCTTCGTCTGCTGGAGTGAGTGAGAACGAAAATGATGACTATGATTGTGAAAGTGAGGAGGGTGTTGAGGCTTTGGCCGAAGAAGTTCCAACAAAGGCTGCTTCTTCTAGGAGTTCATCTAAAAGATCAAGAGCTGCTGAAGTTCATAATTTGTCTGAGAAGCGAAGAAGGAGTAGGATCAACGAGAAAATGAAGGCTTTGCAAAACCTAATTCCAAATTCTAACAAGACAGATAAGGCTTCAATGCTCGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGGTTGAGTTTGCATCCTATGTGCTTTCCTGATGGCTTGCAGCCTCTGCAGTTGTCTCAGATGGGTATGGAATTAAGTGAAAGAAACAGGTCTACCCCTTTAAACATGTCAGCTACTCTGCCTCTGCATCAAGACAACAACCCCTTGCACTATGCATCCAATCAGCCGTGTGTGCCCTATCCTCCATACATTAACAACCCAGAAACTTCTTTCGGTCTGGAACCCCGAATCCAACCGGATACGAAACCTCTTCAACACAAAGAAGGATCTTCTGAGCCAATACGCGGGGAAGACATTCTGCAGTACCAGCAATCAAGTGCTATCCATTCAGATACCAATACATTAGGTGGTTCTCAAGTTGTCAAAGAATTCGATTCAGGCACGACACTATCGTTCCCTTTTGACACGCAAGCATGTGAACCCAAAGACAACAACTCTTTGCAACCATGCATCGGCGGAAGAGATCATTCAGGAGTGATGATAAGAAATAGTGAGACCAACATTGTTGGTAGGTAA 1128 0.4566 MGDMYHFDKNLSSQDEISLFLRQILLRSSPPSSSSSSRPMPTVSCTSNVAHQNVNAHPSFTASQLQDGKILALDSTASFASGSAACSSFKGQGASAANVSSSSAGVSENENDDYDCESEEGVEALAEEVPTKAASSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMCFPDGLQPLQLSQMGMELSERNRSTPLNMSATLPLHQDNNPLHYASNQPCVPYPPYINNPETSFGLEPRIQPDTKPLQHKEGSSEPIRGEDILQYQQSSAIHSDTNTLGGSQVVKEFDSGTTLSFPFDTQACEPKDNNSLQPCIGGRDHSGVMIRNSETNIVGR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01904 375 MobiDBLite consensus disorder prediction 274 298 - -
Gma01g01904 375 MobiDBLite consensus disorder prediction 97 156 - -
Gma01g01904 375 CDD bHLH_AtPIF_like 147 206 - -
Gma01g01904 375 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 316 IPR031066 -
Gma01g01904 375 Coils Coil 183 203 - -
Gma01g01904 375 PANTHER TRANSCRIPTION FACTOR SPATULA 12 316 - -
Gma01g01904 375 SMART finulus 150 199 IPR011598 GO:0046983
Gma01g01904 375 MobiDBLite consensus disorder prediction 284 298 - -
Gma01g01904 375 Pfam Helix-loop-helix DNA-binding domain 148 194 IPR011598 GO:0046983
Gma01g01904 375 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 193 IPR011598 GO:0046983
Gma01g01904 375 MobiDBLite consensus disorder prediction 110 124 - -
Gma01g01904 375 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 204 IPR036638 GO:0046983
Gma01g01904 375 MobiDBLite consensus disorder prediction 142 156 - -
Gma01g01904 375 Gene3D - 139 203 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01904 Gma-Chr1 54581297 54584325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01904 5 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 45.806 9.51e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma01g01904 HLH 7.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01904 - - gmx:100797351 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01904 01 54581297 54584325 Gma11g00500 11 4176148 4180266 GST
Gma01g01904 01 54581297 54584325 Gma17g01596 17 17771842 17774466 PCT
Gma17g01596 17 17771842 17774466 Gma01g01904 01 54581297 54584325 PCT