Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01899 ATGATTTGGGTTCGCGGAGACTCTCTCGGCACTGGCAGCTTCGCCACCGTCAACATAGCCATACCCACAAATACTTCCATTCATTTTCCTTCTCCCACCGCCGTCAAATCCTCCGATGTTCACTCCTCGTCTATGCTGAAAAACGAGAAGGAGATACTCGATTGCCTTGGAGCTTCCCCTTATGTCATCAAATGTTTCGGCCATGATCACACTGTTGAAAACGGAGAAGAGTATTACAACATTTTCCTCGAATACGCCGCCGGTGGTTCTCTCGCCGATCAGGTCAAAAGACACGGCGGGAGGCTTCCGGAGTCTTACGTTCGGAGGTGTACGAGGTCGATCGTCGAAGGTCTAAAACATATTCACGACAACGGTTATGTTCACTGCGATGTGAAGCTTCAAAACATTCTCGTTTTTGAGAATGGGGATGTTAAGATCGCCGATTTTGGGCTCGCGAAGGAGAAAGGGGAGAAACAGGGGACGTTTGAGTGCAGGGGGACGCCGTTGTTTATGTCGCCGGAATCTGTGAACGACAATGAGTACGAGTCGCCGGCGGATATTTGGGCTTTGGGCTGCGCAGTCGTGGAGATGCTGACCGGAAAACCCGCGTGGGATGTTCGCGGATCGAATATATGGTCGTTGTTGATTCGAATTGGGGTGGGAGAAGAATTGCCCAAGATTCCAGAAGAGTTATCAGAAGAGGGAAAAGATTTTCTTTTGAAATGTTTCGTTAAGGATCCAATGAAGAGGTGGAGCGCTGAGATGCTTTTGCATCACCCTTTCGTTAACAATGAAACGGTTTCTTTTCACAAAGTTAATGAGCCGTTGCCGTTACCGTCTCCGTCACCGAGGACACACTTTGATTTAACTCACTGGGCTTCCACCGTAACGACGTGGCTTCCGTCTTCCCCTGATTCTGATGAGTGGCGTATGGCGGAATTCGGGTCCTCGTGTTCGCCGGAGAATCGGTTTCGGCGGCTGCTCACCGATCAGACGCCGGCGAATTGGTCAGAATCGGATGGCTGGACAAGCGTTAGGTGA 1041 0.5043 MIWVRGDSLGTGSFATVNIAIPTNTSIHFPSPTAVKSSDVHSSSMLKNEKEILDCLGASPYVIKCFGHDHTVENGEEYYNIFLEYAAGGSLADQVKRHGGRLPESYVRRCTRSIVEGLKHIHDNGYVHCDVKLQNILVFENGDVKIADFGLAKEKGEKQGTFECRGTPLFMSPESVNDNEYESPADIWALGCAVVEMLTGKPAWDVRGSNIWSLLIRIGVGEELPKIPEELSEEGKDFLLKCFVKDPMKRWSAEMLLHHPFVNNETVSFHKVNEPLPLPSPSPRTHFDLTHWASTVTTWLPSSPDSDEWRMAEFGSSCSPENRFRRLLTDQTPANWSESDGWTSVR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01899 346 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 306 - -
Gma01g01899 346 ProSiteProfiles Protein kinase domain profile. 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g01899 346 SUPERFAMILY Protein kinase-like (PK-like) 5 304 IPR011009 -
Gma01g01899 346 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Gma01g01899 346 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 306 - -
Gma01g01899 346 CDD STKc_MAPKKK 3 262 - -
Gma01g01899 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Gma01g01899 346 Pfam Protein kinase domain 5 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g01899 346 Gene3D Transferase(Phosphotransferase) domain 1 3 292 - -
Gma01g01899 346 SMART serkin_6 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01899 Gma-Chr1 54531189 54532229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01899 1 346 MAP Kinase Kinase Kinase AT4G36950 53.561 5.70e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gma01g01899 Pkinase 9e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01899 - - gmx:100797177 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01899 01 54531189 54532229 Gma11g00505 11 4215650 4217092 GST
Gma01g01899 01 54531189 54532229 Gma17g01602 17 18251387 18252811 PCT
Gma01g01899 01 54531189 54532229 Gma05g00897 05 22333246 22334605 PCT
Gma17g01602 17 18251387 18252811 Gma01g01899 01 54531189 54532229 PCT
Gma05g00897 05 22333246 22334605 Gma01g01899 01 54531189 54532229 PCT