Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01897 ATGGACGTGGACAAACTGAAAACTTCCACTAGTGACAGCAGCATGGACATGATGATGATGATGATGCAAATGGAAAAGTTCCCTGAATTttgtgaacctttttataacaacaacactactactactactactactactactactactcttCTCTACCCAGAAAACGAGTACTTCTTAAACTCCACCACCACCACTCTACCCGTGTTCCCCAACGTCAACAACCCAAACGTTATAACTCCACCACCCACCACTTTGATTAATCCACCACCACCTTCCTCCAATTTCGTTCTACAACAACCCATGACACCTCATCTTGAACCCAACCCGGAGAAGAAGAATTCTGTGGCGGCTATGAGGGAGATGATTTTCCGTGTAGCAGTGATGCAACCTGTTCATATAGACCCGGAATCCATCAAGCCACCGAAGAGAAGGAACGTGAAGATTTCGAAGGATCCTCAGAGTGTGGCGGCGAGACACAGAAGAGAAAGGATAAGCGAGAGAATAAGGATCCTTCAGAGATTAGTTCCCGGTGGGACCAAAATGGACACGGCTTCTATGTTGGATGAGGCCATACACTACGTGAAGTTCTTGAAGAAACAAGTGCAGACGCTGGAACAAGCAGGGGCAACTAGACCCTTGAATGTTGTTGGCTTCCCTACTACTGTGTCCAACGCCAATAATAATGTTAATTATTCTAGTTTTGTGAAGAGTTGCCAACCTTATCCAATGCTGGGTTCTTCAGCTTCTAAACAATTGCTCAGTTGA 765 0.4222 MDVDKLKTSTSDSSMDMMMMMMQMEKFPEFCEPFYNNNTTTTTTTTTTTLLYPENEYFLNSTTTTLPVFPNVNNPNVITPPPTTLINPPPPSSNFVLQQPMTPHLEPNPEKKNSVAAMREMIFRVAVMQPVHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGATRPLNVVGFPTTVSNANNNVNYSSFVKSCQPYPMLGSSASKQLLS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01897 254 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 240 IPR045843 GO:0003700|GO:0006355
Gma01g01897 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 207 IPR036638 GO:0046983
Gma01g01897 254 Pfam Helix-loop-helix DNA-binding domain 158 197 IPR011598 GO:0046983
Gma01g01897 254 SMART finulus 154 203 IPR011598 GO:0046983
Gma01g01897 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 197 IPR011598 GO:0046983
Gma01g01897 254 Gene3D - 147 213 IPR036638 GO:0046983
Gma01g01897 254 Coils Coil 187 207 - -
Gma01g01897 254 CDD bHLH_AtIND_like 149 205 - -
Gma01g01897 254 PANTHER TRANSCRIPTION FACTOR HEC2 1 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01897 Gma-Chr1 54513689 54514453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01897 12 206 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 54.726 5.40e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma01g01897 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01897 - - gmx:100796649 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01897 01 54513689 54514453 Gma11g00507 11 4233554 4234420 GST