Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01888 ATGTCGCAACGATCGGTGCCGGCGCCGTTCTTGACGAAGACGTATCAGTTGGTGGAGGATCAGGGGACGGACCAGGTGATATCGTGGGGTGAAAGTGGGAACACTTTTGTGGTGTGGAAGCATGCGGATTTTGCAAAGGATTTGCTTCCAAAATATTTCAAGCACAACAACTTCTCCAGCTTTGTTCGACAGCTCAATACCTATGGATTCCGAAAAATTGTGCCAGACAAATGGGAATTCGCGAACGAGCATTTCAAGCGAGGGCAGAAGGAGCTTCTCTCCGAGATCAAACGCCGCAAGACCGTGCCTCAATCGTCGGCACATCCCCCGGAGGCCGGAAAGTCCGGCGGCGACGGCAACTCTCCGTTGAACTCCGGCAGCGACGACGCGGGCTCCACCTCAACCTCGTCCTCGTCCTCCGGTTCCAAGAACCAGGGATCGGTGGAAACAAACACAACGCCTTCTCACCAGTTATCGAGCGAGAACGAGAAACTGAAGAAGGATAACGAAACGCTGAGTTGCGAGCTGGCACGTGCGAGGAAGCAGTGCGATGAGCTCGTGGCTTTCCTCAGGGACCGTCTGATGGTGGGTCCCGATCAGATCGATCGCATCATGCGGCAAGGAAGTTGCGGATCTGAAAACGTGGTAGGTGAAGGCGGTGGAGGAGACTGTTTGAAACTGTTTGGTGTTTGGTTAAAAGGGGATACGCTAACAGACAAAAGAAACAACCACAAAAGAGGCCGCGAAGACCAAATGGGCTTCGGTGGGCCTCGCCTCAAGGAGTCAAAGCCCGTTGTTGACTTTGGAGCTGTAAATATCATGATGAAGAGCAACAGGGTTTGCAACTGA 849 0.5312 MSQRSVPAPFLTKTYQLVEDQGTDQVISWGESGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEHFKRGQKELLSEIKRRKTVPQSSAHPPEAGKSGGDGNSPLNSGSDDAGSTSTSSSSSGSKNQGSVETNTTPSHQLSSENEKLKKDNETLSCELARARKQCDELVAFLRDRLMVGPDQIDRIMRQGSCGSENVVGEGGGGDCLKLFGVWLKGDTLTDKRNNHKRGREDQMGFGGPRLKESKPVVDFGAVNIMMKSNRVCN 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01888 282 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma01g01888 282 Coils Coil 155 182 - -
Gma01g01888 282 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 282 - -
Gma01g01888 282 MobiDBLite consensus disorder prediction 95 168 - -
Gma01g01888 282 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma01g01888 282 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma01g01888 282 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 282 IPR027725 -
Gma01g01888 282 Gene3D - 2 101 IPR036388 -
Gma01g01888 282 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma01g01888 282 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma01g01888 282 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma01g01888 282 MobiDBLite consensus disorder prediction 118 159 - -
Gma01g01888 282 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01888 Gma-Chr1 54424433 54426845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01888 2 282 HSF AT4G36990 52.027 3.34e-82 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gma01g01888 HSF_DNA-bind 7.7e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01888 K09419 - gmx:100791543 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01888 01 54424433 54426845 Gma11g00515 11 4320783 4323371 GST
Gma01g01888 01 54424433 54426845 Gma17g01621 17 18739276 18743160 PCT
Gma17g01621 17 18739276 18743160 Gma01g01888 01 54424433 54426845 PCT