Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01871 ATGGGTCTCTGCACTTCCAAACCCACTCTTTCCTCTCCTCAATCCGCCACACACTCCCCCGTGGCACCTTCTCAAAACGACGCCGTCACACTCACTCACAGTGCCGAACCTCACTCCAATGGCGAAAACCAAAACCCAAAGGAGCCTGAGAACAGCGGTAAGAGATCTCCGTTTTTCCCGTTCTACAGTCCGAGTCCGGGCCGCTACGTGTTCCCGGTCTCGCCGCGGCGCTTCTTCAAGCGCCCGTTTCCGCCGCCGTCGCCGGCCAAGCACATAAAGGCGGCGCTAGCGCGGCGGCACGGGTCGGTGAAGCCCAACGAGGCTGCCATACCGGAGGCCGAGGCGGTCGCCGGGCTCGACAAGAACTTCGGATTCTCCAAGCATTTCGGAAACAAATATGAACTTGGAGGTGAGGTTGGGAGAGGGCACTTTGGATACACTTGTGTTGCGAAGGTGAAGAAAGGGGAGCTGAAGGGACAACAAGTGGCCGTTAAAGTCATTCCAAAAGCCAAGATGACCACTGCAATTGCCATCGAGGATGTGAGAAGGGAAGTAAAAATATTGAGAGCTTTGACTGGACACAAGAATCTAGTACAATTCTATGATGCATATGAAGACCATGATAATGTCTATATAGTAATGGAGTTGTGTGAAGGAGGAGAGTTGTTAGACAGAATATTATCAAGAGGTGGGAAATACACAGAGGAAGATGCAAAAGCTGTCCTGAGACAAATACTGAATGTTGTTGCTTTTTGCCATTTACAGGGTGTTGTGCATCGTGATCTTAAACCTGAGAACTTCTTGTTTGCATCCAAGGAGGATACCTCAAAGCTGAAGGCCATAGACTTTGGGTTGTCAGATTTTGTTAAACTAGATGAAAGACTTAATGATATTGTTGGCAGTGCATACTATGTGGCTCCCGAAGTTCTACATAGAGCTTACAGTACAGAGGCTGATGTCTGGAGCATTGGAGTGATTGCATATATTTTATTATGTGGTAGCCGTCCCTTTTGGGCCCGGACCGAATCTGGTATCTTTCGTGCGGTATTGAAAGCTGATCCAATTTTTGATGAACCTCCTTGGCCTTCTCTGTCAGATGAGGCAACCAATTTTGTTAAGCGATTACTAAATAAAGATCCACGGAAAAGAATGTCCGCAGCACAGGCATTAAGTCATCCATGGATTAGAAACAAGGATGTAAAAGTACCTCTGGATATTCTAATATTCAAGCTCATGAAGGCATATATGCGTTCCTCATCTCTACGAAAAGCAGCTTTAAGGGCTCTGTCTAAGATGTTAACTGTTGATGAGCTATTTTATTTGAGGGAGCAGTTTGCACTTTTAGAGCCAAGCAAAAATGGCACTATTAGCTTGGAAAATATCAAAGCGGTCTTGATGGTAAATGCAACAGATGCTATGAAGGAGTCACGCATACCTGACTTTTTGGCATCACTTAATGCATTACAATATAGAAGGATGGATTTTGACGAGTTCTGTGCAGCTGCCCTTAGTGTTCATCAACTTGAAACACTTGACCAGTGGGAGCAAAATGCACGTTGTGCCTATGACCTTTTTGAAAAGGATGGAAACAAGGCCATAGTCATAGACGAACTAGCTTCGGAGCTTGGGCTTGGTCCATCTGTCCCTGTTCACGCTGTTCTCCATGATTGGATTCGGCACACTGATGGAAAATTAAGTTTCCTTGGATTTGTCAAACTGTTGCATGGCCCATCTAGAAGTCTTGCAAAAGGTCAATAG 1758 0.4608 MGLCTSKPTLSSPQSATHSPVAPSQNDAVTLTHSAEPHSNGENQNPKEPENSGKRSPFFPFYSPSPGRYVFPVSPRRFFKRPFPPPSPAKHIKAALARRHGSVKPNEAAIPEAEAVAGLDKNFGFSKHFGNKYELGGEVGRGHFGYTCVAKVKKGELKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLVQFYDAYEDHDNVYIVMELCEGGELLDRILSRGGKYTEEDAKAVLRQILNVVAFCHLQGVVHRDLKPENFLFASKEDTSKLKAIDFGLSDFVKLDERLNDIVGSAYYVAPEVLHRAYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPIFDEPPWPSLSDEATNFVKRLLNKDPRKRMSAAQALSHPWIRNKDVKVPLDILIFKLMKAYMRSSSLRKAALRALSKMLTVDELFYLREQFALLEPSKNGTISLENIKAVLMVNATDAMKESRIPDFLASLNALQYRRMDFDEFCAAALSVHQLETLDQWEQNARCAYDLFEKDGNKAIVIDELASELGLGPSVPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLAKGQ 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01871 585 SMART serkin_6 133 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g01871 585 Pfam Protein kinase domain 133 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g01871 585 Gene3D - 412 503 - -
Gma01g01871 585 SUPERFAMILY EF-hand 422 576 IPR011992 -
Gma01g01871 585 Gene3D Transferase(Phosphotransferase) domain 1 222 406 - -
Gma01g01871 585 CDD STKc_CAMK 132 394 - -
Gma01g01871 585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Gma01g01871 585 PANTHER SERINE/THREONINE-PROTEIN KINASE 40 580 - -
Gma01g01871 585 SUPERFAMILY Protein kinase-like (PK-like) 130 426 IPR011009 -
Gma01g01871 585 MobiDBLite consensus disorder prediction 1 58 - -
Gma01g01871 585 Gene3D Phosphorylase Kinase; domain 1 126 221 - -
Gma01g01871 585 MobiDBLite consensus disorder prediction 1 51 - -
Gma01g01871 585 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 40 580 - -
Gma01g01871 585 Gene3D - 419 573 - -
Gma01g01871 585 ProSiteProfiles Protein kinase domain profile. 133 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g01871 585 ProSitePatterns Protein kinases ATP-binding region signature. 139 165 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01871 Gma-Chr1 54269351 54274719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01871 1 585 EF-hand Containing Proteins AT3G50530 73.228 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gma01g01871 Pkinase 6.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01871 K00924 - gmx:100794177 1138.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01871 01 54269351 54274719 Gma11g00534 11 4438678 4443394 GST