Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01868 ATGTCATCATCATCGAACTCGCCGTGCGCGGCGTGCAAGTTTCTGAGGCGAAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCTCAGAGGTTCGCTTACGTGCACAAGGTTTTCGGCGCCAGCAACGTGGCGAAGCTTCTCAACGAGCTCAGCGCGGCGCAGCGAGACGACGCCGTTAAGTCCCTCGCGTACGAGGCCGAGGCGCGTCTCCGGGACCCCGTCTACGGATGTGTCGGCCTCATCTCCGTCCTCCAACACAAGCTCCGGCAGATCCAGGTCGAACTCAACAATGCAAAGAAAGAACTCGCAACATATATTGGCCCCCAAGCTATTCAAGGAATTCCCGCCCCCATGCTCCAACAACACCCTAACAACCCCTTTCCCGGAGCCATGTATGGGAACATGCCGACTGCGACGGCCGCTGTTCACGGCGGGCAGTTGGTGATTCGCGACGCACAGCCGGCGCCTCAGCAGCAGCAGCAGCAGATCTTGGAGGCGCAGCAGTTGGCTGCCGCTGTGGCGGCGAGGGAACAGCAAGAGATGTTTAGGAGTTACGAACACCAACAGCAGCAGGAGTTTCTAAGGTTCAGTGGTGGGTTCGATGTGGGTTCGGCTTCTTCTGCTGGTGGGTTCAGCCAAGTGTCCCCAGCTGCTGCCTCTGCTGATCAGTTGTCTCCTTCGTTGGCTTTGGGATCATTCGATAACGCTTACCACATGCAGCAACCGCAGCAAGAAGAGCCTCACCATCATCATCATCATCCTCATCACATTCCTCTTGAGGCGCAGCTACTTCTCCCTCCGCAGCAGAAGCAACAAACCCATCATGAGTCGCAACTGCCCCTTCACCAGCAACATTCTGATAACGAGGAGCgtaggagtgttggtccatcttgttga 915 0.5596 MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHKLRQIQVELNNAKKELATYIGPQAIQGIPAPMLQQHPNNPFPGAMYGNMPTATAAVHGGQLVIRDAQPAPQQQQQQILEAQQLAAAVAAREQQEMFRSYEHQQQQEFLRFSGGFDVGSASSAGGFSQVSPAAASADQLSPSLALGSFDNAYHMQQPQQEEPHHHHHHPHHIPLEAQLLLPPQQKQQTHHESQLPLHQQHSDNEERRSVGPSC 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01868 304 Coils Coil 87 107 - -
Gma01g01868 304 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Gma01g01868 304 MobiDBLite consensus disorder prediction 273 304 - -
Gma01g01868 304 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Gma01g01868 304 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 277 - -
Gma01g01868 304 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 3 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01868 Gma-Chr1 54227144 54229868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01868 3 244 AS2 family AT5G66870 52.985 1.60e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma01g01868 LOB 9.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01868 - - gmx:102664012 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01868 01 54227144 54229868 Gma11g00537 11 4476184 4481366 GST
Gma17g01655 17 19763166 19763741 Gma01g01868 01 54227144 54229868 PCT