Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01866 ATGGTTGTTTGCGACTTCTGGGAGCTCAGTCTCGCTCAGAGTCAGAGAAAAACACCCAAATCAAATATTATCATGGAGCCCAGCTTGGATTTGAGACTGGGCTTTGTCCCCAAACCCCTTTCCCTGTTTTTCGGCGACGTTTCTGGGAACAGAGACAAGTGCGACAAAGTGGTCACACTCGATGGCTTCGTGCAGAGATTGGAGGAAGAGTTGACAAAGGTCGAGGCTTTCAAACGCGAGCTTCCTCTCTGCATTCTCCTCCTAAACGATGCTATAGCGAGATTGAAGGAGGAAAAAGTGAAGTGTTCGGGAATGCAAGATCCGCCTCTTAAAACCAGTTCAGGAGGAAATGAAAATGAAAACTCTGAGAAGAAGAATTGGATGAGTTCAGCACAGCTTTGGAGCACTCAGAAATCCAAATCGAGGAATGAGGAAGATGATAGGTCTGTGCCAGCGAACTCAATTAATGGGAATTCGTGTGTCCCCGAGAAGGAGGGCTCGCAAGTTCCGAGCTTTGGTTTGATGGCTCGTGCTTCTGAACTGAGTCATAGCAATTCCAAGAGTGTTGGTGGAGATACTAGTTCTGGCTCCTCTTTGCTCCGTGTTGAGGTACAGAGTCAGCCACAGCCGCCGCAGCATATGCAGCAGAATCCGAGGAAACAACGGCGGTGCTGGTCGCCGGAGCTTCACCGGCGCTTTGTGGACGCCCTTCAACAACTTGGTGGAGCACAAGTGGCCACTCCTAAACAGATTAGAGAACTGATGCAGGTGGAAGGCCTTACAAATGATGAAGTGAAAAGTCATTTGCAAAAGTACAGGCTTCATGTTAGGAGATTCCCAGTTTTTTCAATTGGCCAGGTTGATAATGGCTCATGGATGACACAGGATGAATGTGGGGATAAATCAAAGGGAAACATGTCACAGTCTGGTTCTCCACAGGGTCCTCTCACACCTCTGCTCCTAGGAGGAGCAGGATCCGCTAAGGGTCTCTCAAGCCCTGGACGGAACAGTGTGGATGCAGAAGATGAGCAATCATCAGATTGCCGGAATTGGAAAGGAGGGCTCCACCACCAGCAGCTTGAAACTGATAATCACAGCCTCTAA 1104 0.49 MVVCDFWELSLAQSQRKTPKSNIIMEPSLDLRLGFVPKPLSLFFGDVSGNRDKCDKVVTLDGFVQRLEEELTKVEAFKRELPLCILLLNDAIARLKEEKVKCSGMQDPPLKTSSGGNENENSEKKNWMSSAQLWSTQKSKSRNEEDDRSVPANSINGNSCVPEKEGSQVPSFGLMARASELSHSNSKSVGGDTSSGSSLLRVEVQSQPQPPQHMQQNPRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVEGLTNDEVKSHLQKYRLHVRRFPVFSIGQVDNGSWMTQDECGDKSKGNMSQSGSPQGPLTPLLLGGAGSAKGLSSPGRNSVDAEDEQSSDCRNWKGGLHHQQLETDNHSL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01866 367 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 22 363 - -
Gma01g01866 367 MobiDBLite consensus disorder prediction 291 367 - -
Gma01g01866 367 SUPERFAMILY Homeodomain-like 218 278 IPR009057 -
Gma01g01866 367 MobiDBLite consensus disorder prediction 150 165 - -
Gma01g01866 367 Gene3D - 219 276 - -
Gma01g01866 367 Pfam Myb-like DNA-binding domain 222 273 IPR001005 -
Gma01g01866 367 MobiDBLite consensus disorder prediction 340 367 - -
Gma01g01866 367 MobiDBLite consensus disorder prediction 107 138 - -
Gma01g01866 367 MobiDBLite consensus disorder prediction 203 222 - -
Gma01g01866 367 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 22 363 IPR044787 GO:0003700|GO:0006355
Gma01g01866 367 MobiDBLite consensus disorder prediction 291 315 - -
Gma01g01866 367 MobiDBLite consensus disorder prediction 102 167 - -
Gma01g01866 367 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 220 275 IPR006447 GO:0003677
Gma01g01866 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 217 277 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01866 Gma-Chr1 54210738 54212833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01866 28 270 G2-like Transcription Factor Family AT4G37180 42.471 1.79e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gma01g01866 Myb_DNA-binding 1.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01866 - - gmx:100785723 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01866 01 54210738 54212833 Gma11g00539 11 4493389 4495599 GST
Gma17g01657 17 19807321 19810251 Gma01g01866 01 54210738 54212833 PCT