Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01829 ATGTCCCAAGATTTTCAACAAGGAATCTTCAGCTTCCCGAATGGGTTGGAGAGAGGAAGGGTGATGAGTCCGCAGCAGCAGATCCGGCGGGACAAGGTAAGGTTCGAGGCGGCGCCATTGGTAGGGATAGAGGAGGAGGAACCAGTGTACGAGACCGCCGGAATGTTGTCGGAGATGTTCAATTTTCCGCCGGCGACGGAATTGCTGGAGCAGCAGCACGCCACGGCGACGTTCCGGGCGGCGAGGCAAGCCGGAGAGTGGTACGGAAACAGACAGCAGCAACAGCAACAGATTTCAGGCATTAATGCTGACTCAGCAGCAGCCATGCAACTTTTTCTGATGAACCCTCAAACGAGGTCGCCTTCTCCTCCTCAAAGCCACACTACTCCTTCTTCAACTCTTCACATGTTGCTTCCAAATCCTTCTTCCAATTCCCTCCAAGGATTTACTGGTTCGGCCGCGGGAGGGTCTTTTGGTCAATTCACATGGGTTCCTGAGGGTGCTCACCAACAAGGAGGCGTGGTGGAAGGGCAAGGTCTTTCGTTATCGCTGTCTTCTTCGTTGGAGGCAGCGAAAGCCGAGGAATTGAGGATGGGCGATAGTGGTTTTCTATATTACAATCACCAACAAggtggtggtggtggtggtggaggtggtggtCCTTCTTCTTCTTCTTCGGCGGTTCAGTTTCAGTACAAGAATAATAATAGCCATCATCATCAAGCATTGCATTTACAAGGGGCGATGGGACACGACAACAACCACCAGGGACATGTTGGGTTTGGGTCATCCTCGTTAGGTGTAGTTAATGTTCTGAGAAATTCAAAGTATGTGAAGGCTGCACAAGAGTTGCTGGAAGAGTTTTGCAGTGTTGGGAGGGGTCAGTTTAAGAAGAGCAAGTTCAATAGACAGAATTCAAACCCTAATTCAAATCCCGGTGGTGGTGGTTCTTCGCCTTCATCAAAAGATGCGCCTCCTCCTCCTCCTCCTTTGTCAGCGGCTGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTACTATCTATGCTTGACGAGGTGGACAGGAGATACAACCACTACTGCGAGCAAATGCAAATGGTAGTGAACTCATTTGACCTGATGATGGGATTTGGGGCGGCAGTGCCATACACAGCACTGGCGCAGAAAGCAATGTCTCGGCATTTCCGGTGTCTGAAGGAGGCGATAACAGCGCAGCTGAAGCAAAGTTGTGAAGTACTTGGAGACAAAGATGGGGCGGGAAGCTCAGGAGGTTTGACCAAGGGTGAGACCCCAAGGCTTAAGATGTTAGAACAAAGCCTAAGACAGCAGAGAGCCTTCCACCAGATGGGCATGATGGAACAAGAAGCTTGGAGACCCCAGAGAGGCTTGCCTGAACGTTCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTTCTCCACCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGCCTATCGCGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAACTTAAAGAAGCAGAGAGTGCAGAAGAGAGAGAAAAGGACCAAAGCAACAACATTAGTGGCAACCAAGCACAAATTCCAACAACACCATCAGCGGCCACAACATCAACAGCAACAGCAACAGCGCCACCACCACCACCATCAACAACGACAAAAACAACAAAACCGACAGGCAAAAGATCCGATACCATCAATGCCCCCGAAAGCGACCCTTCACAGCACCTTGCAATGAATAACAGACAAGGCTTCTCGGAAAACCAAGCAAAGAAGTCCACCGCATCCACCACCACCACCACCATCGCCTCTGAGGTGGCGCCACCCGTGTCTCAGTGCTTCGACGACTCAGACCTGCCCGCACACAGATTAATGGCCTCTGATGACACGTGTCATTTGGTCACAGCAGATTTTGGGACCGCATCTGCAAGTGCTGACATTGGATCCACACTCATTAGGTTTGGGACCACACCCGGTGACGTGTCACTCACCCTAGGGCTTCGCCACGCCGGGAACATGCCCGAGAAATCTCCTTTCTCTGTTAGAGACTTTGGAGCCATTTAA 2133 0.4984 MSQDFQQGIFSFPNGLERGRVMSPQQQIRRDKVRFEAAPLVGIEEEEPVYETAGMLSEMFNFPPATELLEQQHATATFRAARQAGEWYGNRQQQQQQISGINADSAAAMQLFLMNPQTRSPSPPQSHTTPSSTLHMLLPNPSSNSLQGFTGSAAGGSFGQFTWVPEGAHQQGGVVEGQGLSLSLSSSLEAAKAEELRMGDSGFLYYNHQQGGGGGGGGGGPSSSSSAVQFQYKNNNSHHHQALHLQGAMGHDNNHQGHVGFGSSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKKSKFNRQNSNPNSNPGGGGSSPSSKDAPPPPPPLSAADRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKEAITAQLKQSCEVLGDKDGAGSSGGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELKEAESAEEREKDQSNNISGNQAQIPTTPSAATTSTATATAPPPPPSTTTKTTKPTGKRSDTINAPESDPSQHLAMNNRQGFSENQAKKSTASTTTTTIASEVAPPVSQCFDDSDLPAHRLMASDDTCHLVTADFGTASASADIGSTLIRFGTTPGDVSLTLGLRHAGNMPEKSPFSVRDFGAI 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01829 710 MobiDBLite consensus disorder prediction 527 541 - -
Gma01g01829 710 MobiDBLite consensus disorder prediction 116 149 - -
Gma01g01829 710 SUPERFAMILY Homeodomain-like 458 524 IPR009057 -
Gma01g01829 710 SMART HOX_1 457 521 IPR001356 GO:0003677
Gma01g01829 710 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 44 699 - -
Gma01g01829 710 CDD homeodomain 457 518 IPR001356 GO:0003677
Gma01g01829 710 MobiDBLite consensus disorder prediction 299 318 - -
Gma01g01829 710 MobiDBLite consensus disorder prediction 577 601 - -
Gma01g01829 710 ProSiteProfiles 'Homeobox' domain profile. 454 517 IPR001356 GO:0003677
Gma01g01829 710 MobiDBLite consensus disorder prediction 527 601 - -
Gma01g01829 710 MobiDBLite consensus disorder prediction 299 337 - -
Gma01g01829 710 MobiDBLite consensus disorder prediction 542 564 - -
Gma01g01829 710 Pfam Associated with HOX 271 403 IPR006563 -
Gma01g01829 710 Gene3D - 460 522 - -
Gma01g01829 710 Coils Coil 520 543 - -
Gma01g01829 710 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 44 699 - -
Gma01g01829 710 SMART prehox3 266 404 IPR006563 -
Gma01g01829 710 Pfam Homeobox KN domain 474 513 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01829 Gma-Chr1 53907401 53915369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01829 1 504 Homeobox Transcription Factor Family AT4G36870 54.595 1.20e-153 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gma01g01829 POX 8.8e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01829 - - gmx:100786231 1213.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01829 01 53907401 53915369 Gma01g01829 01 53907401 53915369 ECH
Gma11g00572 11 4767037 4774964 Gma01g01829 01 53907401 53915369 ECH
Gma01g01829 01 53907401 53915369 Gma11g00572 11 4767037 4774964 GST
Gma01g01829 01 53907401 53915369 Gma16g01311 16 31806142 31814600 PCT
Gma01g01829 01 53907401 53915369 Gma02g00548 02 5472504 5479922 PCT
Gma16g01311 16 31806142 31814600 Gma01g01829 01 53907401 53915369 PCT
Gma02g00548 02 5472504 5479922 Gma01g01829 01 53907401 53915369 PCT