Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma01g01828 | ATGGGTTGGTTTACCAAGTTGCTTAAGGGCTCTGATTATAAAATTTTACGAGGGCAATACCATGGCAAATATGGAGAGGACAGAATTTGGGATAATCATCATAGTTCGATGGATGATTTGACAGATATTGAGAAAGAAGACATTGACCGTGCAATTGCACTTTCTCTGTCAGAGGAGGATCATAAAGGGAAAAAAGTTGTTGATTACGACTCTCAATCTGAAGATGAGGAACTTTGTAAAATTGATGATGAGgaagatgaacatcttgttaaagttcatctagaagaagaagaacgtcttgctaaaattcaacaagaagaagaagaacgtcttgctaaaattcaacaagatgaacgtcttgctaaaatccaacaagaggatgaacgtcttgctaaaGCTCAACTTGAGGAAGACGAGCAACTTGCTAGGGCAATTCAAGAAAGCTTGAAAATTGGTTCTCCTCCTCGATATGACAACGATTCTTCAATTCTATCTTTTCCTCACCTCTTTCCCCCCGGATACAGAATCTGTGCTGGATGCAAGACTGAGATTGGCCAAGGAAGATTTTTAAGTTGCATGGGAGGTGTCTGGCATCCAGAATGCTTCTGCTGCCATGCATGTCATCTTCCAATCACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCTTACCATAAAGCATGCTATAGGGAGAAGCATCACCCAAGATGTGATGTTTGTAAGAACTTTATCCCAACTAATTCATCTGGTCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATACTGCCCATCACATGAGCTTGATGGCACTCCTCGTTGTTGTAGCTGCGAAAGAATGGAGTCTAGGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTTTACCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAATTGGAGCAGCAAATTCCTATGCTCTTGGTTGAGAGACAAGCTCTGAATGAGGCTATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGGCTATGCTTGTCAGAAGAGCAAACTGTCACCACCATTTCAAGGAGGCCAAGGATTGGAGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGTTGATCCGTCATTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGGTTGTTAACAGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTTAGGCTTAAAGGTTATCCTAACCTCAGTCCAGAAGTTGAAGAAGGAATCTGCCAAGTCTTGGCTCATATGTGGTTGGAATCAGAGCTCTATTCTGGAACTGGGAATGACGGTGCATCATCCTCAGCATCATCTTCTTCTTCATCATCGCCTTCCTCTTCTGTTTCAACAAAGAAGGGTAAACGGTCCGACTTTGAGAAGAAACTTGGTGAATTTTTTAAACACCAGATTGAGTCAGATACCTCTTCAGCATATGGAGATGGATTCAGATTGGGTAACCAAGCAATGCTCAAGTATGGGCTTAAAAGGACCCTTGACCATATCCATATGACAGGAAGTTTTCCATATTGA | 1641 | 0.3803 | MGWFTKLLKGSDYKILRGQYHGKYGEDRIWDNHHSSMDDLTDIEKEDIDRAIALSLSEEDHKGKKVVDYDSQSEDEELCKIDDEEDEHLVKVHLEEEERLAKIQQEEEERLAKIQQDERLAKIQQEDERLAKAQLEEDEQLARAIQESLKIGSPPRYDNDSSILSFPHLFPPGYRICAGCKTEIGQGRFLSCMGGVWHPECFCCHACHLPITDYEFSMSSNRPYHKACYREKHHPRCDVCKNFIPTNSSGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMESRDTKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTISRRPRIGAGYRAIDMITEPYRLIRHCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLESELYSGTGNDGASSSASSSSSSSPSSSVSTKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRLGNQAMLKYGLKRTLDHIHMTGSFPY | 546 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma01g01828 | 546 | Coils | Coil | 94 | 117 | - | - | |
| Gma01g01828 | 546 | ProSiteProfiles | LIM domain profile. | 175 | 235 | IPR001781 | - | |
| Gma01g01828 | 546 | SMART | uim | 43 | 62 | IPR003903 | - | |
| Gma01g01828 | 546 | SMART | uim | 136 | 155 | IPR003903 | - | |
| Gma01g01828 | 546 | Pfam | LIM domain | 177 | 232 | IPR001781 | - | |
| Gma01g01828 | 546 | MobiDBLite | consensus disorder prediction | 466 | 492 | - | - | |
| Gma01g01828 | 546 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 204 | 260 | - | - | |
| Gma01g01828 | 546 | Gene3D | Cysteine Rich Protein | 171 | 235 | - | - | |
| Gma01g01828 | 546 | CDD | LIM_DA1 | 177 | 229 | - | - | |
| Gma01g01828 | 546 | SMART | lim_4 | 176 | 228 | IPR001781 | - | |
| Gma01g01828 | 546 | Coils | Coil | 123 | 143 | - | - | |
| Gma01g01828 | 546 | MobiDBLite | consensus disorder prediction | 466 | 488 | - | - | |
| Gma01g01828 | 546 | ProSiteProfiles | Ubiquitin-interacting motif (UIM) domain profile. | 136 | 155 | IPR003903 | - | |
| Gma01g01828 | 546 | ProSitePatterns | LIM zinc-binding domain signature. | 177 | 211 | IPR001781 | - | |
| Gma01g01828 | 546 | PANTHER | PROTEIN DA1-RELATED 2 | 114 | 546 | IPR045218 | - | |
| Gma01g01828 | 546 | PANTHER | PROTEIN DA1-RELATED 2 | 1 | 121 | IPR045218 | - | |
| Gma01g01828 | 546 | PANTHER | TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED | 1 | 121 | - | - | |
| Gma01g01828 | 546 | PANTHER | TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED | 114 | 546 | - | - | |
| Gma01g01828 | 546 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 169 | 202 | - | - | |
| Gma01g01828 | 546 | Pfam | Protein DA1 | 326 | 541 | IPR022087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma01g01828 | Gma-Chr1 | 53874607 | 53882301 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | Others | Gma01g01828 | DA1-like | 6e-105 | CL0126 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma01g01828 | - | - | gmx:100817969 | 1108.98 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma01g01828 | 01 | 53874607 | 53882301 | Gma01g01828 | 01 | 53874607 | 53882301 | ECH | |
| Gma01g01828 | 01 | 53874607 | 53882301 | Gma11g00574 | 11 | 4796617 | 4801426 | GST | |
| Gma01g01828 | 01 | 53874607 | 53882301 | Gma16g01309 | 16 | 31745913 | 31750281 | PCT | |
| Gma01g01828 | 01 | 53874607 | 53882301 | Gma02g00547 | 02 | 5427287 | 5432453 | PCT | |
| Gma16g01309 | 16 | 31745913 | 31750281 | Gma01g01828 | 01 | 53874607 | 53882301 | PCT | |
| Gma02g00547 | 02 | 5427287 | 5432453 | Gma01g01828 | 01 | 53874607 | 53882301 | PCT |