Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01821 ATGGTCTCTCATGGTATCAATTCTATCCTTTGGCACTTTGTTTTGGTTATTGTCATTGTTGCCCTTTTCACTCCAACCCTTAGTGCCGCAAAACAATCTAAAATAAATGGTTTAAAAATGAATGTAATTGATCGATGTTGGAGACTGAATCCTGAATGGAGGAGGCATCGACCTCAACTAGCAACATGTTCCGTTGGTTACACTGGCAAGATGACAAACAACATTGGAGATGACCTCATCCATTATAAAGTTATTGATCCTAGTGATGATCCTATAAACCCTAAATTTGGAACTTTGAGGTATGGAGCTTCAGTAATTCAAGGTAAAGTGTGGATCACATTCCAAAGAGACATGCACATTAAGCTTGAGAGACCCCTTCTTATTAGTAGTTTCACCACCATTGATGGTCGAGGTGTTAACGTTCACATTGCTGACAATGCATGCATAATGATCTTTAAGGCCACCAACATAATCATCCATGGCATTCGGGTTCATCATTGCAAACCTCAAGCCCCAGGGATCGTGATGGGACCTGAAGGAAAGGTGATTTGGATTGACCATAATACACTTTATAATTGTCAAGATGGTCTACTAGATGTAACACGAGGTTCCACTGATGTGACTATATCCAATAACTGGTTTAGAGACCAAGACAAGGTTATGCTTCTTGGGCACGACGATGGATATGTGAGAGACCAAAACATGAAGATCACTGTTGTGTACAATCACTTTGGGCCTAATTGTAATCAGCGTATGCCAAGGATTCGTCATGGATATGCACATGTAGCCAACAATTTGTACTTAGGATGGGTGCAATATGCCATTGGTGGAAGCATGGGACCTAGCCTCAAAAGTGAAGCTAACCTCTTTATAGCACCAACAACAGGGAGTAAAGAGGTGACATGGAGAAAAAATAGTCATAAAAATGGAGATATATGGGAATTTCATTCAGTGAGAGATGCTTTTGAAAATGGAGCCTCCTTTGCAGTAACAAAAGGAGGACGTGTGCCAAAGCCAAATTATAGTAAGGAACAATGCTTTAAAGTTGTTAATGTCAACTCCGTTAGATCATTGACGAGCTCATCAGTTCACTTTTCCAACCCACATGCCGCCGTGCGCCTCCTCCGCTCCCACCACCGCCCTCCTTCCGGTTTTCACCTTTGCGATCTGAACCTCGTAATGAGTCCAGTCTCAATCATTGCATGTTCTTGGCGGTTATCTGCATCACCACCAACCTCATCTAAGAACTCCTTTGACTTCACGACGCATAATGCAGGGCCAATTCTAATATGA 1293 0.4207 MVSHGINSILWHFVLVIVIVALFTPTLSAAKQSKINGLKMNVIDRCWRLNPEWRRHRPQLATCSVGYTGKMTNNIGDDLIHYKVIDPSDDPINPKFGTLRYGASVIQGKVWITFQRDMHIKLERPLLISSFTTIDGRGVNVHIADNACIMIFKATNIIIHGIRVHHCKPQAPGIVMGPEGKVIWIDHNTLYNCQDGLLDVTRGSTDVTISNNWFRDQDKVMLLGHDDGYVRDQNMKITVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWVQYAIGGSMGPSLKSEANLFIAPTTGSKEVTWRKNSHKNGDIWEFHSVRDAFENGASFAVTKGGRVPKPNYSKEQCFKVVNVNSVRSLTSSSVHFSNPHAAVRLLRSHHRPPSGFHLCDLNLVMSPVSIIACSWRLSASPPTSSKNSFDFTTHNAGPILI 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01821 430 PANTHER PECTATE LYASE 2 365 - -
Gma01g01821 430 PANTHER PECTATE LYASE 18-RELATED 2 365 IPR045032 GO:0030570
Gma01g01821 430 SMART amb_all 117 296 IPR002022 -
Gma01g01821 430 Gene3D - 40 365 IPR012334 -
Gma01g01821 430 Pfam Pectate lyase 128 290 IPR002022 -
Gma01g01821 430 PRINTS Pollen allergen Amb family signature 251 270 IPR018082 -
Gma01g01821 430 PRINTS Pollen allergen Amb family signature 313 337 IPR018082 -
Gma01g01821 430 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Gma01g01821 430 PRINTS Pollen allergen Amb family signature 273 292 IPR018082 -
Gma01g01821 430 SUPERFAMILY Pectin lyase-like 33 343 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01821 Gma-Chr1 53804226 53807395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01821 71 300 Polysaccharide Lyase AT5G09280 65.323 2.99e-125 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01821 K01728 - gmx:100780437 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01821 01 53804226 53807395 Gma11g00579 11 4864973 4866498 GST