Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01809 ATGAATCATCGACAACCTTTCCAAGACCACATGATGCTCATGTCTCAGTTACTCCCTGCTGATGCATACACTCAAATTATTGCTCAACAAGGAGACACTAAGAAGCCAAGACGCCGTCGTAACAAGAAGAACAAAGGAGGAGAAAACGCTGCCTCGGAAGCCAACAAGAAGAGGAAGCTTAGTGATGACCAAGTTAATCTCCTTGAACAAAACTTTGGAAATGAACACAAACTTGAGTCCGAGAGAAAGGACAGGCTGGCAATGGAGCTTGGTTTGGACCCTCGACAAGTTGCTGTGTGGTTTCAAAACAGAAGAGCTCGTTGGAAGAACAAAAAGTTGGAAGAAGAGTACTCCAACCTTAAAAAAAATCATGAAGCCACCTTGCTCGAGAAATGTCGCCTAGAGACTGAGGTGTTGAAGCTCAAAGAGCAACTTTCTGAGGCAGAGAAAGAGATTCAGAGGCTGCTAGAGAGTGCTGAGAGAGTCCCAAGCAACAGTTCTAGTTCGTCACAGTCACAGTCAATGGAAGCGGTGGACCCACCATTCTTTGGAGAATTTGGAGTTGATGGATATGAGGATGATGTGTTTTACGTGCCTGAGATCCATTACATCAACGGCATGGAATGGATTAATCTGTATATGTAA 645 0.4434 MNHRQPFQDHMMLMSQLLPADAYTQIIAQQGDTKKPRRRRNKKNKGGENAASEANKKRKLSDDQVNLLEQNFGNEHKLESERKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKNHEATLLEKCRLETEVLKLKEQLSEAEKEIQRLLESAERVPSNSSSSSQSQSMEAVDPPFFGEFGVDGYEDDVFYVPEIHYINGMEWINLYM 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01809 214 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Gma01g01809 214 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Gma01g01809 214 MobiDBLite consensus disorder prediction 157 176 - -
Gma01g01809 214 SUPERFAMILY Homeodomain-like 55 120 IPR009057 -
Gma01g01809 214 Pfam Homeodomain 56 110 IPR001356 GO:0003677
Gma01g01809 214 MobiDBLite consensus disorder prediction 28 61 - -
Gma01g01809 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 8 213 - -
Gma01g01809 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 8 213 IPR045224 GO:0003700
Gma01g01809 214 CDD homeodomain 56 112 IPR001356 GO:0003677
Gma01g01809 214 Gene3D - 47 119 - -
Gma01g01809 214 Coils Coil 103 162 - -
Gma01g01809 214 SMART HOX_1 54 115 IPR001356 GO:0003677
Gma01g01809 214 MobiDBLite consensus disorder prediction 159 176 - -
Gma01g01809 214 MobiDBLite consensus disorder prediction 45 61 - -
Gma01g01809 214 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Gma01g01809 214 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01809 Gma-Chr1 53692114 53694688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01809 10 214 Homeobox Transcription Factor Family AT4G36740 58.879 3.42e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gma01g01809 Homeodomain 4.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01809 K09338 - gmx:100809616 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01809 01 53692114 53694688 Gma01g01809 01 53692114 53694688 ECH
Gma01g01809 01 53692114 53694688 Gma11g00595 11 4988444 4990799 GST
Gma01g01809 01 53692114 53694688 Gma02g00535 02 5313538 5315377 PCT
Gma02g00535 02 5313538 5315377 Gma01g01809 01 53692114 53694688 PCT