Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01800 ATGCCGGTTGACTTGGACAATGTTTCCACAGCTTCAGGGGAAGCTAGCGTGTCTTCCTCTGGCAATCTGACAGTGCCCCCAAAACCCACAACAAAGAAGAAGCGAAACCTTCCAGGAATGCCAGATCCGGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTGATGGCCACGAACCGTTTCGTGTGTGAAATTTGCAACAAGGGGTTTCAGAGGGACCAGAACCTTCAGCTTCATCGGAGGGGTCACAACCTTCCGTGGAAGCTGAGGCAGAGGTCGAGCAAGGAGGTGAGAAAGAGGGTGTACGTGTGTCCCGAACCAACGTGCGTTCACCACGATCCTTCTAGAGCGTTGGGGGATCTCACGGGGATTAAGAAGCACTTCTGCAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCTAAGAAATACGCGGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGCACTTTGTTCTCGAGGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTAGCAGAGGAAAGTGCGAGATCTCAGCCTCAGACTGTTGCAAAGGCTAGTTCAGAGTCAGATTCGAAGGCTGTGACCGGTGATTCGTCGCCTCCGGTGGCGGTGGAGGCTCCGCCGCCACTTGTACCGCCTGTTAGTTCTCAGTCAAACAGTGTTGTTGTACCATCATCTAGCTTGCAGACACAAAAACCAGAGTTGCCTGAAAATTCCCCACAAATCATAGAAGAACCAAAGGTCAATACTGCTATGAATGGGagctgtagcagtaccagtaccagcactaccagctcaacaagcaacagcaacagtggtgctagcagcagtgtatttgcaagcttgtttgcctcatcatcagcatccgcaactgcaagcctccacTCTCAAACACCAGCATTCACTGACCTAATTAGGGCCATGGGGCATCCGGATCATCCAGCAGACCTCTCAAGGCCTTCATCTTCAGAGCCCATTTCTCTGTGCCTAGCCACCAATCATGGCTCATCCATTTTTGGAACGGGAAGGCAGGAACGCCGTCAGTATGCCCCACCGCCACAGCCAGCCATGTCTGCCACTGCATTGCTGCAGAAAGCCGCCCAAATGGGTGCAGCTGCAACAAATGCCTCTTTTCTTCGTGGGTTAGGCATTGTATCATCTTCTGCATCAACGTCATCAGTTCAGCAAGATAATTTGCAATGGGGCCATCAGCCAGTGGAACCAGAGAGTGCCTCAGTTCCTGCAGGTCTTGGACTTGGGCTTCCCTGCGACAGTAGCTCTGGACTAAAGGAGTTAATGATGGGGACTCCCTCCATGTTTGGTCCAAAGCAAACCACCCTCGATTTTCTCGGGTTGGGGATGGCTGCTGGGGGCACCCCTGGTGGAGGCTTATCGGCACTCATCACCTCCATTGGTGGTGGTCTGGATGTTACTACTGCGGCGGCATCCTTTGCTAGTGGAGAATTCCCTGGCAAAGATATTGGAAGGAGGAGCACTTGA 1554 0.4801 MPVDLDNVSTASGEASVSSSGNLTVPPKPTTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQPQTVAKASSESDSKAVTGDSSPPVAVEAPPPLVPPVSSQSNSVVVPSSSLQTQKPELPENSPQIIEEPKVNTAMNGSCSSTSTSTTSSTSNSNSGASSSVFASLFASSSASATASLHSQTPAFTDLIRAMGHPDHPADLSRPSSSEPISLCLATNHGSSIFGTGRQERRQYAPPPQPAMSATALLQKAAQMGAAATNASFLRGLGIVSSSASTSSVQQDNLQWGHQPVEPESASVPAGLGLGLPCDSSSGLKELMMGTPSMFGPKQTTLDFLGLGMAAGGTPGGGLSALITSIGGGLDVTTAAASFASGEFPGKDIGRRST 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01800 517 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 7 516 - -
Gma01g01800 517 Gene3D Classic Zinc Finger 115 195 - -
Gma01g01800 517 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Gma01g01800 517 MobiDBLite consensus disorder prediction 1 42 - -
Gma01g01800 517 MobiDBLite consensus disorder prediction 195 214 - -
Gma01g01800 517 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Gma01g01800 517 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 516 - -
Gma01g01800 517 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Gma01g01800 517 MobiDBLite consensus disorder prediction 233 292 - -
Gma01g01800 517 MobiDBLite consensus disorder prediction 195 292 - -
Gma01g01800 517 Gene3D Classic Zinc Finger 41 107 - -
Gma01g01800 517 MobiDBLite consensus disorder prediction 9 29 - -
Gma01g01800 517 SMART c2h2final6 137 157 IPR013087 -
Gma01g01800 517 SMART c2h2final6 102 132 IPR013087 -
Gma01g01800 517 SMART c2h2final6 61 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01800 Gma-Chr1 53632694 53636387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01800 1 516 IDZ Gene Family AT5G66730 59.091 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma01g01800 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01800 K25869 - gmx:100806404 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01800 01 53632694 53636387 Gma01g01800 01 53632694 53636387 ECH
Gma01g01800 01 53632694 53636387 Gma16g01291 16 31491889 31496039 PCT
Gma01g01800 01 53632694 53636387 Gma02g00530 02 5263776 5266601 PCT
Gma16g01291 16 31491889 31496039 Gma01g01800 01 53632694 53636387 PCT
Gma02g00530 02 5263776 5266601 Gma01g01800 01 53632694 53636387 PCT