Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01788 ATGGAGGCGAAGGACAAAGTGAAGAACGAGGATTCTGCAGCGGAGTCTCCAACTTCGGTCCTTGAAGACGAGGATGTCTGTGCCCTGAAAGAGGAAGTTAAGTTGGAGGAAATGGTGACTGCAGACGTTAAAGATGACGGGTCCTCTCTTATATCGAAAACAATGGTGGAGGAGGAAGAGAAGCTACTTGAAGCTAGGATAAAGGAAGAGGAGGTGCAGTATGAGGAGGCAGTAGACCTTAATGACATACAGTTTAACAAATTGGATGAGCTTTTGACTCAAACCAGACTGTACTCTGAGTTTCTGCTCGAAAAAATGGATGACATCACACTTGCTGTGGGTGAACAAGAGAACAGGGAAGAGCAAGAGAGCAATCCTTCTGCGAAGAAGGGCCGTGGATCAAAAAGAAAAGTTGCTTCCCAGTACAATACTAGGAAGGCTAAAAAGGCAGTTGCTGCCATGCTGACAAGATCTAAAGAAAGTGAGAAGACTGAAGATACGAACATGACTGAGGAAGAAAGAGTTGAGAAAGAGCAGAAAGAGCTCATGCCTTTACTCACAGGTGGAAAATTGAAGAATTATCAACTGAAAGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACGATTGGATTTCTCTCACATCTAAAAGCAAAAGGTCTGGATGGGCCGTACATGATAATTGCTCCTTTATCAACCCTCTCAAACTGGGTGAACGAGATTTCTAGGTTTGCACCATCACTCCCTGCCGTTATCTACCATGGTGACAAGAAACAGAGAGATGATATCCGGAGGAAACATATGCCCACTAGAACAATTGGCCCGCAATTTCCTATAGTCATAACTTCTTACGAGATTGCTTTAAATGATGCCAAGAAATATTTCAGGTCATACAATTGGAAATATCTTGTTGTTGATGAGGGACACAGACTCAAAAACTCACAATGCAAATTAGTGAAGGCATTGAAATTCATAAATGTTGAAAACAAGCTTCTTTTAACTGGAACTCCTCTTCAGAATAACTTGGCTGAACTATGGTCTCTGCTGAACTTCATTTTGCCTGATATTTTTGCATCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGGAAGAGCAATAACGGAGCAACCAAGGAAGAACTGGAAGAGAAACGAAGATCCCAAGTAGTAGCAAAGCTTCATGCCATTCTTCGGCCCTTTCTTCTACGTAGGATGAAATCCGATGTTGAGATTATGTTGCCACGGAAAAAGGAGATTATTATCTATGCAAACATGACTGAGCATCAGAAGAATTTGCAGGATCATTTAGTTAATAAGACACTGGGGAACTATTTAAAAGAAAATATGTCAAGTGGACGTTCTGTTCCTGCAGGTATGATTCGTAATTTGGCTATTCAACTTAGGAAGGTGTGTAACCATCCTGATCTCCTTGAGTCAGCATTTGACGATTCATATTTGTATCCTCCTTTAGAAGAGATAGTTGGACAATGTGGAAAATTCCATTTGCTTGATCGATTGCTGCAACGTTTATTTGCAAGAAATCACAAAGTTCTTATCTTCAGTCAGTGGACTAAGGTGTTAGATATAATGGATTATTATTTTAGTGAAAAAGGCTTTGAGGTTTGCAGGATAGATGGTGGTGTGAAACTGGATGAGAGGAAACAACAGATCCAGGACTTCAATGATGTAAATAGCAATTGTAGAGTTTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATTAACCTCACTGCAGCTGATACTTGCATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTACAAGCCATGGATAGATGCCACAGAATAGGCCAAACAAAACCTGTTCATGTTTACAGGCTCTCAACTGCTCAATCTATAGAGGGTCGCATGTTGAAAAGAGCTTTCAGCAAATTAAAGCTTGAGCATGTAGTGATTGAGAAGGGACAGTTTCATCAAGAACGTACAAAACCTGCCAGTATGGATGAAATTGAGGAAGATGATGTTTTGGCATTGCTTCGCGATGAAGAAACAGCTGAAGATAAAATGATACATACAGATATTAGTGATGAAGACCTGGAGAAGCTCTTGGATCGCAGTGATCTTATAGTCAATGACTTTAACGATGATAACTTCAAAGCTCCAGTCAGTGTGTTTCCTCTTAAAGGACCAGGGTGGGAGGTGGTGATTCCAACTGCGACTGGGGGCATGCTCTCTACTCTTAACAGCTAG 2289 0.4102 MEAKDKVKNEDSAAESPTSVLEDEDVCALKEEVKLEEMVTADVKDDGSSLISKTMVEEEEKLLEARIKEEEVQYEEAVDLNDIQFNKLDELLTQTRLYSEFLLEKMDDITLAVGEQENREEQESNPSAKKGRGSKRKVASQYNTRKAKKAVAAMLTRSKESEKTEDTNMTEEERVEKEQKELMPLLTGGKLKNYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKAKGLDGPYMIIAPLSTLSNWVNEISRFAPSLPAVIYHGDKKQRDDIRRKHMPTRTIGPQFPIVITSYEIALNDAKKYFRSYNWKYLVVDEGHRLKNSQCKLVKALKFINVENKLLLTGTPLQNNLAELWSLLNFILPDIFASLEEFESWFNLSGKSNNGATKEELEEKRRSQVVAKLHAILRPFLLRRMKSDVEIMLPRKKEIIIYANMTEHQKNLQDHLVNKTLGNYLKENMSSGRSVPAGMIRNLAIQLRKVCNHPDLLESAFDDSYLYPPLEEIVGQCGKFHLLDRLLQRLFARNHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGGVKLDERKQQIQDFNDVNSNCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIEGRMLKRAFSKLKLEHVVIEKGQFHQERTKPASMDEIEEDDVLALLRDEETAEDKMIHTDISDEDLEKLLDRSDLIVNDFNDDNFKAPVSVFPLKGPGWEVVIPTATGGMLSTLNS 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01788 762 SMART ultradead3 187 383 IPR014001 -
Gma01g01788 762 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 372 IPR014001 -
Gma01g01788 762 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 520 683 IPR001650 -
Gma01g01788 762 MobiDBLite consensus disorder prediction 1 23 - -
Gma01g01788 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 422 IPR027417 -
Gma01g01788 762 Gene3D - 155 421 IPR038718 -
Gma01g01788 762 Pfam Helicase conserved C-terminal domain 520 630 IPR001650 -
Gma01g01788 762 MobiDBLite consensus disorder prediction 114 179 - -
Gma01g01788 762 Gene3D - 428 731 IPR027417 -
Gma01g01788 762 MobiDBLite consensus disorder prediction 114 130 - -
Gma01g01788 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 721 IPR027417 -
Gma01g01788 762 SMART helicmild6 546 630 IPR001650 -
Gma01g01788 762 CDD SF2_C_SNF 506 640 - -
Gma01g01788 762 PANTHER SNF2/RAD54 HELICASE FAMILY 3 761 - -
Gma01g01788 762 Coils Coil 161 181 - -
Gma01g01788 762 Coils Coil 53 80 - -
Gma01g01788 762 MobiDBLite consensus disorder prediction 153 179 - -
Gma01g01788 762 Pfam SNF2-related domain 194 494 IPR000330 GO:0005524|GO:0140658
Gma01g01788 762 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 3 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01788 Gma-Chr1 53480330 53486361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01788 177 651 RAD5 or RAD16-like Gene Family AT3G16600 23.793 1.14e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma01g01788 SNF2_N 1.8e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01788 K19001 - gmx:100777687 1504.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01788 01 53480330 53486361 Gma01g01788 01 53480330 53486361 ECH