Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01786 ATGGGGGACAACAACAGCAACAACGATGCCTTCATGCGCAACCAAAACGCCGCCGTTCAGGCCCGCACCAAAGCGCAGAACCGTTCCAACGTCCTTCAGCTCAAACTGATTGGACAGAGTCACCCAACCGGTCTAACAGCGAACCTGTTGAAGCTCTTCGAGCCTAGGCCTCCGTTGGAGTACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAGGGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCAAAGGCTGCTGAGGAGCTTGAGAAATATGATCCACATAATGACCCAAATGTGTCGGGAGATCCATACAAGACATTGTTTGTGGCTAAACTCAGTTACGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGATTAGTTGCTGACAAAGATACAAATAAGCCCAGGGGTTATGCTTTCATTGAGTATCTGCATACAAGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGATGGTAGAAGGGTGCTTGTGGATGTTGAGCGTGGGAGGACTGTTCCAAATTGGAGACCTCGCCGCCTAGGTGGTGGGCTTGGTACTACTAGAGTTGGGGGTGAAGAAGTTAATCAGCGACATTCTGGGAGGGAGCAACAGCAGTCTCGTTCTGAAGAACCAAGAGTGCGGGAGGACCGACACGGTGATAGAGACAGGGAAATATCACGTGAAAGAGTTAGGGACAAAGACAAAGAACGGGAGCGATCACGTGAACATTCTCATGAAAGGGTCAGGGATCGCGATCAGAGAGAGGATAGGCACCACAGAGACCGAGATAGGACCAGGGACAGAGACAGGGAAAGAgatagagatcgtggacgtgatagagatagagcacgtgatCGTGAGCGAGGGAGGGACCGTGACCGGGATCGAGAATATGATCGACATCGTGAGAGGGATAGAGATTATGAAGTTGGCGAAACTGATCGAGGACGCTCACGTGATAGGGAGTCTCATTATGATCGTGTTGAATCTAAACATGGGGAAAGGAATCATGACTATGAGCCTGAGGATGATCGTGGTAGGCAAAACCAGTATGAGCATGGACATAGGCATGCAGACCCTGATCATGACACTGAGCATTATGACCCCTACAATCATGGAGATGATCGTGGTGACCATTACAATCAGTATCCTGACCCTGATAGGATGGAAGATGACTACCATGCAGGACGTGCAACATCTGAATCACATGAAAAGGAGAGAAGTCATGATGTGGACCGTGAATATCGGCGCTCAGAGAGATCACATTCCCGGGAGTATGATTATTAG 1437 0.4774 MGDNNSNNDAFMRNQNAAVQARTKAQNRSNVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLSGMAQFVSKFAQPGDPEYAPPVPETETPAQKRARIHKLRLEKGAAKAAEELEKYDPHNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVADKDTNKPRGYAFIEYLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQQSRSEEPRVREDRHGDRDREISRERVRDKDKERERSREHSHERVRDRDQREDRHHRDRDRTRDRDRERDRDRGRDRDRARDRERGRDRDRDREYDRHRERDRDYEVGETDRGRSRDRESHYDRVESKHGERNHDYEPEDDRGRQNQYEHGHRHADPDHDTEHYDPYNHGDDRGDHYNQYPDPDRMEDDYHAGRATSESHEKERSHDVDREYRRSERSHSREYDY 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01786 478 MobiDBLite consensus disorder prediction 84 105 - -
Gma01g01786 478 MobiDBLite consensus disorder prediction 223 478 - -
Gma01g01786 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 219 IPR000504 GO:0003723
Gma01g01786 478 PANTHER - 1 357 - -
Gma01g01786 478 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 44 132 IPR022023 -
Gma01g01786 478 Gene3D - 128 253 IPR012677 -
Gma01g01786 478 SMART rrm1_1 142 215 IPR000504 GO:0003723
Gma01g01786 478 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 1 357 - -
Gma01g01786 478 CDD RRM_snRNP70 140 230 IPR034143 GO:0030619
Gma01g01786 478 MobiDBLite consensus disorder prediction 244 478 - -
Gma01g01786 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 212 IPR000504 GO:0003723
Gma01g01786 478 SUPERFAMILY RNA-binding domain, RBD 129 241 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01786 Gma-Chr1 53459447 53464349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01786 143 189 C2H2 Transcription Factor Family AT2G19380 40.426 2.30e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01786 K11093 - gmx:100800903 724.931