Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01778 ATGAGAGGGCAACAAGATAAGGAAATAGAGATACCAACCACAACCACAACCACTTTAGGTTACAACCTTCTTCCCAACCGAGATTCTTCTTCTTCCTCTTCCAAGCTCTCTTCTCCAACTGTTGGTGAAAGAAGTAGCAGTGATCATGATCATCAAAGTCACACATTGATCTTCAACGAAACACCTCACCATAATCTCTATCCACCACCTCCTTCTCTTGCACCGCCTCAACCTCAAAGACCCACATTAGATCCAGATCTAAGCACCCCAATTGCTCCCACATCGAACCCCCCAAGAACCTCGACCCCATCGATCAGGTACCGAGAATGTCTTCGGAACCACGCGGCGAGCATGGGGAGCCACGTGGTGGACGGCTGCGGGGAGTTCATGGCAAGTGGAGAAGAAGGCACGCCGGAATCACTAAGATGCGCGGCGTGCGAGTGCCACCGCAACTTCCACAGAAAAGAAGTTGAAGGAGAATTACAACCGCAATCGCTACCACAACAACATGTTCCAAATTACCACAGCTACTACACCAACAAGCACAACGGTCACTTTCACTACCCTACACCCTCTTCTTCATCCCTTCATCATAGATTGGTTGCCACTACTACCGCCACACCGAGCTTGGTCCCCCCAGTGATGATGGCCTTCGGAGGCCCAGCTGAGTCATCTAGTGAAGATCTCATCAACAACACTGGAGCCCAGTTATCAGTGCAGCAGCAGGCACCACTAACACACTCTTCCAACAAGAAGAGGTTCAGGACTAAGTTCTCTCAGCACCAGAAGGATAGGATGATGGAGTTTGCTGACAAGATTGATTGGAAGATCCAGAAACACAATGAGCAGGAGGTACAGCACTTTTGTTCTCAAGTGGGTGTCAAGAGACAGGTTTTTAAGGTTTGGATGCACAATAACAAGCAAACTAGTAGTAGTAAGAAGCAGCAAATGTAA 954 0.4853 MRGQQDKEIEIPTTTTTTLGYNLLPNRDSSSSSSKLSSPTVGERSSSDHDHQSHTLIFNETPHHNLYPPPPSLAPPQPQRPTLDPDLSTPIAPTSNPPRTSTPSIRYRECLRNHAASMGSHVVDGCGEFMASGEEGTPESLRCAACECHRNFHRKEVEGELQPQSLPQQHVPNYHSYYTNKHNGHFHYPTPSSSSLHHRLVATTTATPSLVPPVMMAFGGPAESSSEDLINNTGAQLSVQQQAPLTHSSNKKRFRTKFSQHQKDRMMEFADKIDWKIQKHNEQEVQHFCSQVGVKRQVFKVWMHNNKQTSSSKKQQM 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01778 317 MobiDBLite consensus disorder prediction 1 104 - -
Gma01g01778 317 MobiDBLite consensus disorder prediction 88 104 - -
Gma01g01778 317 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 251 308 IPR006455 -
Gma01g01778 317 Pfam ZF-HD protein dimerisation region 105 157 IPR006456 -
Gma01g01778 317 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 107 156 IPR006456 -
Gma01g01778 317 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 106 157 IPR006456 -
Gma01g01778 317 Gene3D - 237 313 - -
Gma01g01778 317 MobiDBLite consensus disorder prediction 8 43 - -
Gma01g01778 317 SUPERFAMILY Homeodomain-like 245 309 IPR009057 -
Gma01g01778 317 MobiDBLite consensus disorder prediction 64 83 - -
Gma01g01778 317 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 52 311 - -
Gma01g01778 317 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 52 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01778 Gma-Chr1 53404740 53405693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01778 87 313 ZF-HD Transcription Factor Family AT2G18350 48.498 4.76e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gma01g01778 ZF-HD_dimer 1.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01778 - - gmx:100799830 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01778 01 53404740 53405693 Gma01g01778 01 53404740 53405693 ECH
Gma01g01778 01 53404740 53405693 Gma11g00632 11 5258660 5260349 GST
Gma01g01778 01 53404740 53405693 Gma16g01270 16 31155442 31156395 PCT
Gma01g01778 01 53404740 53405693 Gma02g00509 02 5067770 5073331 PCT
Gma16g01270 16 31155442 31156395 Gma01g01778 01 53404740 53405693 PCT
Gma02g00509 02 5067770 5073331 Gma01g01778 01 53404740 53405693 PCT