Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01774 ATGGGAAAAGAAAAGGACTTGCGCTTCTGCAGAATTCTTTCTCTCTCTGGGACACTCCTAATGATAACTGATATTGGTGAAGGGGAAGAGTTACAAAATCCCCGCTCCTTTAAGGTGCATAGTAAAATCTGCACAGAACTCGCAAAATTAGTGGATAGAATCTCAAGAATAGTTCCAGACATAGAGGCGGCAAGGCCAGGATTCTCATCAGGAATAGAGTCTCTGTGTTTGCTGAACAATGCAATTGATAAAGCTAAACTACTTCTGCTACATTGCTCTGAATGTAGCAAActctacctgGCTGTGACAGGGGATACAGTACTCTCAAGATGCCTAAAGGCAACAAGATCATTAGAGAAGAGCTTAATCCAAATTCAGGATATGGTTCCTGTTATGTTGGCTGTAGAGGTTTCTAGAATAATTCATGATCTTGAGTGTACGAGATTTGTTCTGGACCCTAATGAAGAAGAGGCTGGGAGGTTTGTGAGAGAGTTGCTTACTTTAACCTCAGATTCAGTTGATGATTCTGAAGTTAAAGCTCTCCAGTTTGCAGCATCTCGATTGAATATAACATCCCCAAAAGCCATCATAATAGAACAACGATCTATTAGGAAGTTGCTAGAAAAACTTGGACCAAATGACCTCAAAAAGAAGAATATACTGAGATATCTTCTGCATCTACTGAAAAGGCATGGAAAGCTCATGGTGGGAGAACATGTGGAGAAGCTCTATTCTCGTTCTGAGGAACAAGCTGCAACTGAGAACTCGAGTCACGGTTCTCTACGAAGCAACCATGTTGAATCAGACTCAAGCATGAACTATGGTCAGTATAAAACTCACACCAATGAGTTAAGTGGAGTTGCACCCCTTGAGGAGTATTATAAGTGCCCAATATCCTCAAGGTTGATGTATGATCCTGTTATCATTGAGTCAGGAGTAACATATGAAAGGATCTGGATAAAAAAGTGGTTTGATGAGGGTAATGACATATGCCCCAAAACAAGAAAGAAACTAGTCAATATGGGATTAACTCCAAACATGGCCATGAAAGACTTGATATCAGAGTGGTGCAAAAATAATGGAGTCTCCATTCCAGACCCTAGTAGGCATGCAGAAGATATTCGCACATGGGAAACTTCAAACACTTCCATTAACAGTTTAGCAAGCTATTTCAATGATTTCACCGCACCGGTGGATCTTAGTAACATGTCAATTGGGTCATTGGATACTAGTTTTAGTTCAGATGCCTCACATTGTAAGACCACAAGTGGCTCAAATTTGATGCAGACCAAGAGCCGTGACAATTCTCACAAACATCAGGCTCATACAGAGATACATGATACTGATTTGATGCTCTTGCCTCAACTCTCTGATCTTCAATGGGATTCTCAATGCAAGGTCATTCAAGATCTGAAAGATCATTTGAAAAGCAATAGCCAAGCTTTTGTTTCTGTATCAGCAGAGAATTTCATAGAACCACTCGTGAGGTTTCTGAGCAATGCATATGATCTGCGTGATGTTCAAGTGCTGAGAGCCGGAAGTCAGCTTCTGTTGGAGTTTGTGAACAACTGCAGGCATGATTTCTTTTCCCCTTTCCCAATTTTAAATGGTAAGACTAATTTGAGTGAAGATACTTTCATTATGTTGGCAAGTTTTCTCGATTCAGAAGTGATAGGAGAAACTCTTGCCATAATGGAAGAACTGTCAGGATATGGGTTTGGTAAAACTAAAATTGCAGCATCTAGTGCTCTCAGTTCTATTCTAAACATGCTTGATTCCGAAAACAAAGGTTTCCAACAGCAAGCTATTAGAATAATGTACAACTTGTCCTTCAGTGGTGAAGTTTGTCACCGCATGCTATCTCTCAGGTGCATCCCAAAATTGCTGCCATTTTTTAAAGACAGAACCCTTTTGAGATACTGTATATATATATTGAAAAATCTCTGTGACACGGAAGAGGGTAGGAAATCTGTTTCTGAAACAAAGGGATGCATATCTTCTGTTGCTGAAATACTTGAGACAGGCAATAACGAGGAACAAGAACATGCGTTGGCTGTTCTAGTTTCTCTATGTTCTCAACATGTGGATTATTGTAAGTTGATAATGCGTGAGCATGAGGAAATCATGGGCTCTCTTTTCTATATCTCACAGAATGGAAATGACAAAGGAAAGGAAAGTGCGTTGGAATTGTTCTATCTTTTGAAAGATGTTGACATTGCTGTGAATAAAAATTGTCCTGAGCCAAATATCAACAACTCTTGTCGAGATTCTAACAGTCACGACCGTGAAGAAAAAAAGCCATTAAAAAGATCCACGTTTCTGAAGAAACTATCACAGTTCTCAAAGTCCAGTTCTCATGCAACAAAATCCAAAAGATGA 2379 0.3947 MGKEKDLRFCRILSLSGTLLMITDIGEGEELQNPRSFKVHSKICTELAKLVDRISRIVPDIEAARPGFSSGIESLCLLNNAIDKAKLLLLHCSECSKLYLAVTGDTVLSRCLKATRSLEKSLIQIQDMVPVMLAVEVSRIIHDLECTRFVLDPNEEEAGRFVRELLTLTSDSVDDSEVKALQFAASRLNITSPKAIIIEQRSIRKLLEKLGPNDLKKKNILRYLLHLLKRHGKLMVGEHVEKLYSRSEEQAATENSSHGSLRSNHVESDSSMNYGQYKTHTNELSGVAPLEEYYKCPISSRLMYDPVIIESGVTYERIWIKKWFDEGNDICPKTRKKLVNMGLTPNMAMKDLISEWCKNNGVSIPDPSRHAEDIRTWETSNTSINSLASYFNDFTAPVDLSNMSIGSLDTSFSSDASHCKTTSGSNLMQTKSRDNSHKHQAHTEIHDTDLMLLPQLSDLQWDSQCKVIQDLKDHLKSNSQAFVSVSAENFIEPLVRFLSNAYDLRDVQVLRAGSQLLLEFVNNCRHDFFSPFPILNGKTNLSEDTFIMLASFLDSEVIGETLAIMEELSGYGFGKTKIAASSALSSILNMLDSENKGFQQQAIRIMYNLSFSGEVCHRMLSLRCIPKLLPFFKDRTLLRYCIYILKNLCDTEEGRKSVSETKGCISSVAEILETGNNEEQEHALAVLVSLCSQHVDYCKLIMREHEEIMGSLFYISQNGNDKGKESALELFYLLKDVDIAVNKNCPEPNINNSCRDSNSHDREEKKPLKRSTFLKKLSQFSKSSSHATKSKR 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01774 792 MobiDBLite consensus disorder prediction 249 277 - -
Gma01g01774 792 CDD RING-Ubox_PUB 294 336 IPR045210 -
Gma01g01774 792 SMART Ubox_2 293 356 IPR003613 GO:0004842|GO:0016567
Gma01g01774 792 ProSiteProfiles U-box domain profile. 289 363 IPR003613 GO:0004842|GO:0016567
Gma01g01774 792 SUPERFAMILY RING/U-box 287 367 - -
Gma01g01774 792 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 364 IPR013083 -
Gma01g01774 792 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 29 775 - -
Gma01g01774 792 PANTHER U BOX DOMAIN-CONTAINING 29 775 - -
Gma01g01774 792 Gene3D - 451 791 IPR011989 -
Gma01g01774 792 SUPERFAMILY ARM repeat 452 734 IPR016024 -
Gma01g01774 792 Pfam U-box domain 292 360 IPR003613 GO:0004842|GO:0016567
Gma01g01774 792 MobiDBLite consensus disorder prediction 247 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01774 Gma-Chr1 53362807 53368517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01774 34 738 U-box Gene Family AT4G36550 38.256 2.05e-148 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01774 - - gmx:100775550 1494.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01774 01 53362807 53368517 Gma01g01774 01 53362807 53368517 ECH
Gma11g00636 11 5294757 5300231 Gma01g01774 01 53362807 53368517 ECH
Gma01g01774 01 53362807 53368517 Gma11g00636 11 5294757 5300231 GST
Gma01g01774 01 53362807 53368517 Gma16g01266 16 31100803 31106363 PCT
Gma01g01774 01 53362807 53368517 Gma02g00504 02 5035327 5039402 PCT
Gma16g01266 16 31100803 31106363 Gma01g01774 01 53362807 53368517 PCT
Gma02g00504 02 5035327 5039402 Gma01g01774 01 53362807 53368517 PCT