Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01773 ATGTCGTTGAAAAGCATAGTAAGGGAACTAAAGGAGATGAGGGATGGGATTGGTAGCATGTCAAGGCGAGGTGTCGAGAGCAGGCGTTGGAACGGTCGGACAAAGTCACATGTTGCTCCTGATGTCATTCTAACTTCACTTGAACCTATTCAGCAAGGGCAGTGGGCAAATTTACCGCCTGAATTGCTTCTGGACATAATAAGGAGGGTGGAAGATAGTGAGACTACTTGGCCTGCACGTGCTGTTGTTGTTTACTGTGGTTCGGTTTGTAAATCATGGAGGGCTGTTACGAAAGAGATTGTTAAGACTCCTGAACAATGTGGAAGGCTCACATTTCCTATTTCGTTGAAGCAGCCTGGTCCTCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCAACATATCTATTGTACATTGGCCTGGTACCATCGGAGAATGAGACTGATAAGTTGTTATTAGCTGCCAAAAAGGTAAGAAGGGCAACAGGCACAGACTTCGTCATATCTTTGGTTGCAGATGATTTTTTTCGCTCCAGCAACACATATGTTGGAAAACTCAGGTCTAATTTTTTGGGTACCAAGTTCACTATTTATGACAGCCAACCCCCACAAGGAGCTGCAATTCAACCAGATAATAGATCTAGTAGGAGATTTCATTCTAAGCAGGTATCTCCTAGAGTTCCAGCATGTAACTATGTTGTAAGCACCATTGCCTATGAGTTGAATGTTCTCCGTGCAAGAGGGCCAAGGAGAATGCACTGCACCATGAACTCCATATCTGTCTCAGCTGTTCAGGAAGGGGGCAATGCTCCAACTCCTACATCTTTTCCTCAAATCATTGACGAGCCTTTTTCTCCCTCACCAGCACTGAAAGGAAAAGGTCCAATTAGAGATCTAGACAATGCAAGCCTCCCAGAGCTACTACCAGTACAGAGCCAAGACTCAGCTGAGCCTCTTGTACTTAAAAATAAGGCTCCTAGATGGCATGAGCAACTGCAATGCTGGTGCCTAAACTTCAACGGTCGTGTTACAGTGGCTTCTGTTAAAAACTTTCAACTTGTGGCTGCTGTTGATCCATCTCATAATGTTTCTGCTGCAGAACAAGAAAAGGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTTACAATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTTGCCATAtgcttgagcagctttgataccaaaccagcctgtgaatga 1248 0.4271 MSLKSIVRELKEMRDGIGSMSRRGVESRRWNGRTKSHVAPDVILTSLEPIQQGQWANLPPELLLDIIRRVEDSETTWPARAVVVYCGSVCKSWRAVTKEIVKTPEQCGRLTFPISLKQPGPRDSPIQCFIRRNRETSTYLLYIGLVPSENETDKLLLAAKKVRRATGTDFVISLVADDFFRSSNTYVGKLRSNFLGTKFTIYDSQPPQGAAIQPDNRSSRRFHSKQVSPRVPACNYVVSTIAYELNVLRARGPRRMHCTMNSISVSAVQEGGNAPTPTSFPQIIDEPFSPSPALKGKGPIRDLDNASLPELLPVQSQDSAEPLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAAVDPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01773 415 Pfam F-box domain 55 102 IPR001810 GO:0005515
Gma01g01773 415 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 415 - -
Gma01g01773 415 Pfam Tub family 116 410 IPR000007 -
Gma01g01773 415 Gene3D - 48 103 - -
Gma01g01773 415 Gene3D Tubby Protein; Chain A 113 415 IPR025659 -
Gma01g01773 415 MobiDBLite consensus disorder prediction 206 225 - -
Gma01g01773 415 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Gma01g01773 415 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Gma01g01773 415 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Gma01g01773 415 PRINTS Tubby superfamily signature 325 342 IPR000007 -
Gma01g01773 415 PRINTS Tubby superfamily signature 343 359 IPR000007 -
Gma01g01773 415 PRINTS Tubby superfamily signature 372 391 IPR000007 -
Gma01g01773 415 PRINTS Tubby superfamily signature 393 415 IPR000007 -
Gma01g01773 415 ProSitePatterns Tub family signature 2. 400 415 IPR018066 -
Gma01g01773 415 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515
Gma01g01773 415 PANTHER TUBBY-RELATED 1 415 - -
Gma01g01773 415 SUPERFAMILY Tubby C-terminal domain-like 104 415 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01773 Gma-Chr1 53356803 53359996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01773 1 415 TUB Transcription Factor Family AT2G18280 63.942 0.0 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gma01g01773 Tub 3.4e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01773 K19600 - gmx:100798958 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01773 01 53356803 53359996 Gma01g01773 01 53356803 53359996 ECH
Gma11g00637 11 5301339 5303063 Gma01g01773 01 53356803 53359996 ECH
Gma01g01773 01 53356803 53359996 Gma11g00637 11 5301339 5303063 GST
Gma01g01773 01 53356803 53359996 Gma16g01264 16 31089966 31091907 PCT
Gma01g01773 01 53356803 53359996 Gma02g00502 02 5027171 5030680 PCT
Gma16g01264 16 31089966 31091907 Gma01g01773 01 53356803 53359996 PCT
Gma02g00502 02 5027171 5030680 Gma01g01773 01 53356803 53359996 PCT