Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01768 ATGATGGAAGCCCAACTGAAAGTGTTGTCGTTAAGCCCCTCTACTTTGGGTCGCCACTTTCTCTGCAAAACTACCTCACACCCTTCCCTTCCCTTCCCACGCGCCACCCTCACGCGCCCTCCCATTCCTTCGAATTGGAATCCCCGCAGGTTCCTCTTCTCCTCTCTCACTTCTTCCCCATCCCTCAACCCCTTTCTCTCTCACTCCCAAACTGCTGGTGGCGCCTTCCCTTGGAACCCGGCTTCCGAAACCCGAAACGCCGCGTTTTGCGGAGGCAAAGACCGCGTGGCCACGGTGGTGCTGTTGGGGTGGCTGGGAGCCAGAACCAAGCACCTCAAGAGGTACGTCGAGTGGTACAATTCGCGTGGCATTAACGCACTTACCTTCGTCGTCGACGTCAAGGAGCTTCTTCGATTCGACCTCGGCCACGTGCTCGAGACCCGAATCTCTCTCCTCGCCGACCACCTCGTTTCTTGGGTGTCTCGCGAGGAACACGATGGGAGGGAACACTGTCTGGTTTTTCACACTTTCAGCAACACGGGTTGGTTTGTTTATGGTTACATTCTTGCCCGAATGCTGGGTAGTGAGGAACTCATGGAGAAGATTAAGGGATGCATTGTTGATTCGGGAGGAGGAGAACCTTTCAATCCTAAGGTATGGGCTGCTGGTTTTTCTGCAGCTATATTAAAGAAGCGCAACTCTTTAGGACCCGTAGTTGAGGTAGAAGGCAAGCTTAAATCAGAGACTGAAGTTAGCTTGTCAAAGGTTCAACAAAACGAACCTTCCACAATCGAAACAGTGGTCTTGTCACTATTAGAGAAGTTCTTCTCATTTGTTTTGCAGTTGCCAGATGTGAATCAGAGGTTAACAAGGATTGTCAATGTGCTCATGAAACACCAGCCTTGCCCTCAGCTTTACCTGTATAGTACTGCTGACAAAGTAGTTCCATGTCAATCCATAGAAACGTTAATTGAGGAGCAGAGGAAGATGGGAAAGAGGGCTTCAGCGGAGTTGGCAAGGCGCCGGATTGTAATTGGAGTTTGCGATGGACCTATGCTGGCAAAAAAACAGTTTGCTGAACTGATACAGCCCATTGAGGAAAGGATAAATAATGTCAAAACTTTCATAAAGTCTATCAAGCCGGAGTTGGAAGTGCAAGCTGTGCCAATCACAGATCCATTTGGCCCTTCCATTACAGATGAGAACTTGGAGGCTGTGATTGTAAGCAAAGAGACATTACCGGGAGGATTGGCTATAAACAGAAGAAGAGCTGAAAGAGATCTTTCACAGTTGAAGATTGAAGTTGTAGATTTGGTCTCTGGAGAATCAGAAATTGACTCATTTCTTGAATTTGTCCAAAAGGTTGGGAATTTCCAAAATTTTGCAAAGATGAATGATTTGATGACAAAGTCGTTCCTAAGTTATGTGGAACTAAAGAAACAGGCTCGCAAGGACCTTGAAGACGACGATCTTGACATTGAAGCAGGGAAACTCAACCCCACGGAAGACCGCAACCTCTCTCAGTTCTTCCAAGAAGTTGAAGCAATCAAGGTTGAAATGGAAGAGATCTCCAATCTCTTATTTGATCTTCAGCAACTAAATGAAGAGGCAAAGTGCACCCACGGTGCCAAAGTTCTCCGTGGCCTAAGGGACCGGATGGAGTCCGACATGGTTGCCGTGCTTCGCAAGGCACGGACCATCAAGGCAATGCTTGAGGTTCTTGACCAATCCAACATAGCCAATCGTAGTTTGTCAGAATCCTACAAAGAGGGGAGCCCCATTGACAGGACCAGAATGTCTGTCACAAATGGTTTGAGGGTCAAGCTTAGGGACATGATGAATGACTTTCTGTCCTTGAGGGACAAGATTCTATCTGATCACAAGGAAGATTTGAAGAGAAGGTACTATACCGCGACTGGTGAGGTTCCTACTGAGGAGGTCATGGAGAAGATGGTTTCTGGGAGTCTCAAAGTTGAGTTTCTGGCTGGGAAAACGGATGCTGATTTGGGCACTCAGGTTAGGCATGAGGCAGTGATGGATATCCAGAGGAGTTTGAATAAGCTTCACCAAGTTTTTCTTGATATGGCTATTCTGGTTGAGACACAAGGAGAAAAGTTGGATAACATTGAGGATAATGTGGTTAATGCTGGTAACTTTATCCATGGTGGGACTAATAGTCTTTACTATGCCGACCAGATGAAGAAGAAGAACAGAAAATGGTTGTGTTGGGTTTTTGCTGTGGGGCTGATTATACTACTCGTATGCATCATTGCAATGTTGTCTTCTTGA 2289 0.4683 MMEAQLKVLSLSPSTLGRHFLCKTTSHPSLPFPRATLTRPPIPSNWNPRRFLFSSLTSSPSLNPFLSHSQTAGGAFPWNPASETRNAAFCGGKDRVATVVLLGWLGARTKHLKRYVEWYNSRGINALTFVVDVKELLRFDLGHVLETRISLLADHLVSWVSREEHDGREHCLVFHTFSNTGWFVYGYILARMLGSEELMEKIKGCIVDSGGGEPFNPKVWAAGFSAAILKKRNSLGPVVEVEGKLKSETEVSLSKVQQNEPSTIETVVLSLLEKFFSFVLQLPDVNQRLTRIVNVLMKHQPCPQLYLYSTADKVVPCQSIETLIEEQRKMGKRASAELARRRIVIGVCDGPMLAKKQFAELIQPIEERINNVKTFIKSIKPELEVQAVPITDPFGPSITDENLEAVIVSKETLPGGLAINRRRAERDLSQLKIEVVDLVSGESEIDSFLEFVQKVGNFQNFAKMNDLMTKSFLSYVELKKQARKDLEDDDLDIEAGKLNPTEDRNLSQFFQEVEAIKVEMEEISNLLFDLQQLNEEAKCTHGAKVLRGLRDRMESDMVAVLRKARTIKAMLEVLDQSNIANRSLSESYKEGSPIDRTRMSVTNGLRVKLRDMMNDFLSLRDKILSDHKEDLKRRYYTATGEVPTEEVMEKMVSGSLKVEFLAGKTDADLGTQVRHEAVMDIQRSLNKLHQVFLDMAILVETQGEKLDNIEDNVVNAGNFIHGGTNSLYYADQMKKKNRKWLCWVFAVGLIILLVCIIAMLSS 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01768 762 SMART SynN_4 501 628 IPR006011 GO:0016020
Gma01g01768 762 Coils Coil 516 536 - -
Gma01g01768 762 CDD SynN 506 656 IPR006011 GO:0016020
Gma01g01768 762 Gene3D - 501 632 - -
Gma01g01768 762 Gene3D HUPs 332 459 IPR014729 -
Gma01g01768 762 Pfam SNARE domain 705 754 IPR000727 -
Gma01g01768 762 Gene3D - 665 761 - -
Gma01g01768 762 SUPERFAMILY t-snare proteins 504 723 IPR010989 GO:0016020|GO:0016192
Gma01g01768 762 Pfam Eukaryotic protein of unknown function (DUF829) 98 337 IPR008547 -
Gma01g01768 762 CDD SNARE_syntaxin1-like 672 727 - -
Gma01g01768 762 Pfam Syntaxin 508 703 IPR006011 GO:0016020
Gma01g01768 762 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 668 730 IPR000727 -
Gma01g01768 762 PANTHER SYNTAXIN 467 758 IPR045242 -
Gma01g01768 762 SMART tSNARE_6 663 730 IPR000727 -
Gma01g01768 762 PANTHER SYNTAXIN-112 467 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01768 Gma-Chr1 53321242 53332440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01768 464 762 SNARE and Associated Proteins AT2G18260 60.065 4.40e-126 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01768 K08486 - gmx:100796831 656.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01768 01 53321242 53332440 Gma01g01768 01 53321242 53332440 ECH