Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01749 ATGTTTTCCCCAAGAGACATGCCTTCTCCATCCTCAATCTTTTCTGCCTACGCCTCCATGACAGCCTCCATCATGCTCCTACGTTCCATGGCCAACGACCTCGTTCCCCAACCAATCCGTGGCTACCTTTACAGCACGTTCCGTTACCTCATAAAGCCTCGCTCCCCAACCCTCACCCTCATCATCGAAGAGTCCACCGGCATAGCCCGTAACCAAGTCTACGACGCTGCAGAAGCGTACCTCTCCACCCGTGTCAGCCCCGAAAACGAGAGGCTCAAAATCAGCAAGAGCGCAAAGGAGAAGAAATTAACCGTTCGGTTGGAGAAGGGCGAGAAGGTAGTCGACTGCTTCGACGGCGCGTGCTTCAAGTGGAGATTCATCTGCGCGGAATCCGAGAAGAACAACCCCAACGACCACAGCAACAATAACAGCATCTCCGTACGGTCCGAAAAGCGGTCTTTTGAGCTGAGCTTCCCGAAGAAGTACAAGGAAATGGTTCTGGACTCTTACCTGCCCTTCATTCTCGAAAAGGCCAAGGAGATGAAAGACGAGGAAAGGGTTCTGAAGATGCACACTCTCAACACCTCGTATTGTTACAGTGGGGTCAAATGGGACTCTATAAATCTCGAGCATCCTTCAACTTTTGAGACGCTGGCGATGGAGCCGGAGTTGAAGAATGCGGTGATTGAGGACTTGGATAGGTTCGTGAAGAGGAAGGAGTTTTATAAGAGGGTTGGGAGGGCGTGGAAACGTGGCTACTTGCTCTATGGCCCTCCTGGTACTGGCAAGTCTAGCTTGATAGCTGCTATGGCCAATTACTTGAAGTTTGACATCTTTGACCTCCAACTTGGGAACATAGTAAGGGATTCTGACCTCAGGAAACTGCTTCTGGCGACTGCTAATAGATCCATTTTGGTCATTGAAGACATTGATTGCAGTGTGGATCTGCCAGAGCGTCGCCATGGTGATCATGGACGTAAACAAACTGACGTACAGTTGACCTTGTCTGGATTACTGAACTTCATAGACGGGTTATGGTCTAGTTGTGGAGACGAGAGAATCATCATATTCACCACCAACCACAAGGAGAGGCTAGACCCAGCACTGTTGAGGCCAGGAAGAATGGACATGCACATTCACATGTCCTATTGCTCCTACCAAGGCTTCAAGATTTTGGCCTCAAACTACTTAGAAACTCCCTCTGATCACCCCCTCTTTGGTGAGGTAGAGGGGCTAATAGAGGACATACAAATAACCCCTGCGCAAGTGGCAGAGGAGCTGATGAAGAACGAAGACCCTGAGGCCACACTTGAAGGATTCGTGAAGCTACTTAAGAGGAAGAAGATGGAAGGTGATGTGTGTGAGAACTCTACTCCTGATAAAGCAGAACCTACTCATCAGCAATCTAAGAGGCGCAAGGTTGGTTGCAAGCAAAAACGAGGTGTTGGAATTAACAAGAGCATTAGTGGTGTCACTCAAATAAGGACAAGAAGAATGAGAGGGTGTAGTTTGTAA 1515 0.4891 MFSPRDMPSPSSIFSAYASMTASIMLLRSMANDLVPQPIRGYLYSTFRYLIKPRSPTLTLIIEESTGIARNQVYDAAEAYLSTRVSPENERLKISKSAKEKKLTVRLEKGEKVVDCFDGACFKWRFICAESEKNNPNDHSNNNSISVRSEKRSFELSFPKKYKEMVLDSYLPFILEKAKEMKDEERVLKMHTLNTSYCYSGVKWDSINLEHPSTFETLAMEPELKNAVIEDLDRFVKRKEFYKRVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIVRDSDLRKLLLATANRSILVIEDIDCSVDLPERRHGDHGRKQTDVQLTLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHIHMSYCSYQGFKILASNYLETPSDHPLFGEVEGLIEDIQITPAQVAEELMKNEDPEATLEGFVKLLKRKKMEGDVCENSTPDKAEPTHQQSKRRKVGCKQKRGVGINKSISGVTQIRTRRMRGCSL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01749 504 Pfam Domain associated at C-terminal with AAA 35 127 IPR025753 -
Gma01g01749 504 MobiDBLite consensus disorder prediction 452 470 - -
Gma01g01749 504 PANTHER BNAA10G17020D PROTEIN 6 465 - -
Gma01g01749 504 Gene3D - 380 451 - -
Gma01g01749 504 CDD AAA 238 383 - -
Gma01g01749 504 ProSitePatterns AAA-protein family signature. 353 371 IPR003960 GO:0005524|GO:0016887
Gma01g01749 504 MobiDBLite consensus disorder prediction 452 476 - -
Gma01g01749 504 Pfam ATPase family associated with various cellular activities (AAA) 254 382 IPR003959 GO:0005524|GO:0016887
Gma01g01749 504 Gene3D - 202 379 IPR027417 -
Gma01g01749 504 SMART AAA_5 249 385 IPR003593 -
Gma01g01749 504 PANTHER BCS1 AAA-TYPE ATPASE 6 465 - -
Gma01g01749 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 431 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01749 Gma-Chr1 53163339 53167064 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01749 242 427 Miscellaneous Gene Families AT3G02450 32.323 1.73e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01749 - - gmx:100789621 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00655 11 5423826 5429853 Gma01g01749 01 53163339 53167064 ECH
Gma01g01749 01 53163339 53167064 Gma01g01749 01 53163339 53167064 ECH