Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01748 ATGGGATTCTACACACAGAACCTTTTTTCTTCTTTCACCTCAGCTTCATCATGGTTCGAGGTGTACGCTGCCTTCTCCACATTCATGATGCTCCTCAGAACAGCATTCCATGACCTCATTCCCCAGCAATTCCGATCCCTCATTGTCTCAAAGCTAGAGTCCTTCTTCACCAAATACCAACCAAATAACGAAATCCGTCTCAAAATGAACCAATTTTGGGACGAAAATTCGGGAGACCGCAATGAACTTTTCGATGCTGCCCAGGAGTACCTCCCCACCAGGATTTCTCACACCTACAAGTCGCTCAAAGTTGGGAAACTGCAAGACGAGAAGCACATTGAGCTCGCAGTGGATGGAAGTGAAGACGTTGTGGACGAATTTGAAGGCACCAAATTCACTTGGAAGCTGGATGAAGGGTCCAAAGAGGACTCTAATAATCACAACAAGAAGTATAGCTTTGAATTAACCTTCAATGAGAAGCATAGAGAGAAAGCATTGGATCTGTATATTCCACATGTGCTTAAAACATATGAAGCCATAAAAGCTGAGAGGAGGATCGTAAGGATCTATTCCAGGTTAGATGGGTATTGGAACGATAGCGAGTTATCGCATCCTGCCACATTCGACTCACTGGCCCTGAGTCCCGAGTTGAAGAAAGATATCATTGATGATTTGGAACGGTTCCAGAGGAGGAAGGAACATTACAAGAAAGTGGGGAAGCCTTGGAAACGTGGCTACTTGTTGTATGGACCTCCTGGAACTGGAAAATCCAGCCTTATTGCGGCGATGGCGAACTACTTGAAATTCGATGTGTATGATTTGGAGCTTACTTCTATTTATTCTAACTCGGACCTCATGCGATCCATGAAGGAAGCATCTAACCGTTCCATCGTTGTGATTGAAGACATAGACTGCAACAAAGAGGTGCAGGCTAGATCAAGTGGTCTTTCAGACGATCAAGATTCAGTCCCTGACAATGAGGCTGCCAAGGTTAAGACAAATAGGTTTACTCTGTCGGGTCTGCTTAACTACATGGATGGTTTGTGGTCAAGTGGTGGAGAGGAGCGAATTATAATATTCACTACTAACCACAAAGAAAAAATAGACCCTGCCTTGTTGCGCCCTGGTCGTATGGACATGCACATTCACTTGTCCTTCCTCAAAGGCAAGGCCTTTCGAGTCTTGGCTACCAATTATTTGAATATTGAAGGAGATCATCCACTCTTTGAAGAAATTGATGGACTATTGGAGAAATTAGAAGTCACCCCTGCAGTAGTAGCAGAGCAACTGATGAGAAATGAGGATCCTGATGATGCTTTGGAAACATTTGTTACATTTCTCAAAGAAATGGACAAGGATAGTAATTGCCACTTAGAGTTAAGAGGGACTAGTGAGTAG 1398 0.4378 MGFYTQNLFSSFTSASSWFEVYAAFSTFMMLLRTAFHDLIPQQFRSLIVSKLESFFTKYQPNNEIRLKMNQFWDENSGDRNELFDAAQEYLPTRISHTYKSLKVGKLQDEKHIELAVDGSEDVVDEFEGTKFTWKLDEGSKEDSNNHNKKYSFELTFNEKHREKALDLYIPHVLKTYEAIKAERRIVRIYSRLDGYWNDSELSHPATFDSLALSPELKKDIIDDLERFQRRKEHYKKVGKPWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELTSIYSNSDLMRSMKEASNRSIVVIEDIDCNKEVQARSSGLSDDQDSVPDNEAAKVKTNRFTLSGLLNYMDGLWSSGGEERIIIFTTNHKEKIDPALLRPGRMDMHIHLSFLKGKAFRVLATNYLNIEGDHPLFEEIDGLLEKLEVTPAVVAEQLMRNEDPDDALETFVTFLKEMDKDSNCHLELRGTSE 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01748 465 Pfam ATPase family associated with various cellular activities (AAA) 247 384 IPR003959 GO:0005524|GO:0016887
Gma01g01748 465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 435 IPR027417 -
Gma01g01748 465 PANTHER BCS1 AAA-TYPE ATPASE 11 455 - -
Gma01g01748 465 CDD AAA 243 385 - -
Gma01g01748 465 Gene3D - 199 382 IPR027417 -
Gma01g01748 465 SMART AAA_5 242 388 IPR003593 -
Gma01g01748 465 ProSitePatterns AAA-protein family signature. 356 374 IPR003960 GO:0005524|GO:0016887
Gma01g01748 465 Gene3D - 383 450 - -
Gma01g01748 465 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 11 455 - -
Gma01g01748 465 Pfam Domain associated at C-terminal with AAA 40 136 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01748 Gma-Chr1 53156684 53158242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01748 216 384 Calmodulin-binding Proteins AT3G56690 28.249 2.48e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01748 - K08900 gmx:100789094 936.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01748 01 53156684 53158242 Gma01g01748 01 53156684 53158242 ECH