Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01742 ATGGCGGGTTTATTCTCACTAGGGGGTGGTAGTAGTAGTAGAGGGAACACCCAACAAGAGGAAATTCCTCCTCCGGATACCTTATTCTGGTATAACAACAAAAATGATGACGTTTCCTCTTACCACCGAGGTGGCGGGTTTGAGTTATGGAACCAGCAACAACTCATGGGCCAGGGCCCTCCTCCTCAACAGCGGCCTCTCTTTCACCAAGATCTCTACTCCGCGCTGGGCGTTGGGCCCAGCAGGCCCATCTCAGACGATCAGTCGTCGTCGAGATCCGGGTTCATGCTTGGAAGCACAGGAGGAGGAGGAGGGATTAGCTGTCAGGACTGCGGGAACCAAGCCAAGAAAGATTGCCCTCACATGCGGTGCAGGACGTGCTGCAAGAGCCGCGGCTTCGATTGCCAAACCCACGTCAAGAGTACTTGGGTCCCCGCTTCACGCCGCCGCGAACGATTACAACAATTCTCCGCTTTGCAACAAACCCTCGAACCACCTTCTTCTGGAGGAGGTGACCTTCCCAAAAGGCACAGAGAGAGAGACCATCATTATCATTCTCCTCTCGCCTGCACTCGCTTCCCTTCAAACCCCTTGTCCTCAGGGTTAGAGGAGGTGAATTTCCCGGCTTTGGTGAGGTCCGATGCGGAGTTCAGATGCGTACGTGTGAGCTCCATGGACGAGGAGGCGGAGGAGGAGTACGCATACTCAACGGCTGTAAACATTGCAGGACATGTTTTCAAAGGAATTTTATATGACTATGGTCCAGAAGGTAACACTAATTACATGGCTGGTGCTGGGGAAAGCTCTTCTACTGGTGTTGGTGCCTTGAACCTAACCACTGGTGCCATTGTTTCTGAGCCAATTGTTGATCCTTCTTCCTTGTATACGGCTCCTCTTAACACCTTCATCCCTGGTAGCGAATAA 924 0.5238 MAGLFSLGGGSSSRGNTQQEEIPPPDTLFWYNNKNDDVSSYHRGGGFELWNQQQLMGQGPPPQQRPLFHQDLYSALGVGPSRPISDDQSSSRSGFMLGSTGGGGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASRRRERLQQFSALQQTLEPPSSGGGDLPKRHRERDHHYHSPLACTRFPSNPLSSGLEEVNFPALVRSDAEFRCVRVSSMDEEAEEEYAYSTAVNIAGHVFKGILYDYGPEGNTNYMAGAGESSSTGVGALNLTTGAIVSEPIVDPSSLYTAPLNTFIPGSE 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01742 307 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 207 255 IPR006511 -
Gma01g01742 307 MobiDBLite consensus disorder prediction 159 178 - -
Gma01g01742 307 MobiDBLite consensus disorder prediction 9 23 - -
Gma01g01742 307 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 306 IPR007818 GO:0003700|GO:0006355
Gma01g01742 307 MobiDBLite consensus disorder prediction 83 97 - -
Gma01g01742 307 MobiDBLite consensus disorder prediction 79 98 - -
Gma01g01742 307 Pfam Domain of unknown function (DUF702) 105 256 - -
Gma01g01742 307 MobiDBLite consensus disorder prediction 1 27 - -
Gma01g01742 307 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 1 306 - -
Gma01g01742 307 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 107 149 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01742 Gma-Chr1 53089221 53095091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01742 1 305 C2H2 Transcription Factor Family AT5G66350 47.661 3.30e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gma01g01742 DUF702 4.2e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01742 - - gmx:100814589 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01742 01 53089221 53095091 Gma11g00661 11 5503777 5505456 GST