Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01731 ATGGGTCGTGGCAAGATTGAGATAAAGTTGATTGAGAACCCCACCAACAGGCAAGTCACCTACTCCAAGCGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCCAAGGTTTCACTCATCATGTTCTCTAAAAACAACAAGATGCATGAATACATTAGCCCTGGCCTCACGACAAAAAAGATCATTGATCAGTATCAGAAGACTTTGGGGGATATTGATCTGTGGCATTCTCACTATGAGAAAATGCTTGAAAACTTGAAGAAGCTGAAAGATATTAACAATAAGCTCAGGAGACAGATCAGGCATAGGATAGGTGAGGGCTTGGACATGGACGACATGAGCTTCCAGCAACTGCGCACTCTTGAAGAAGATATGGTTTCATCCATAGGGAAAATACGCGAACGAAAGTTTCACGTGATCAAAACTCGGACTGATACCTGTAGGAAAAAGGTTAAAAGCCTGAAGCAGATGAATGGAAATCTGCTGCTTGAACTTAAGGAAAAGTGTGTGATCCATCCACAATTTCTTTTGCACGATGAAGGAGACGAggaatcagcagcagcagcagcagcagcagcagttgcactggccaacggtgCCTCCACCCTGTATGCATTCTGTCATCAGCACCATTCTCATCTGAACCTTTTCTCCCACCATTCTAATGGAGAAGAGCAACCCTTTAAAACTGATCATGACCTTCGCCTTGCTTGA 732 0.3989 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKIIDQYQKTLGDIDLWHSHYEKMLENLKKLKDINNKLRRQIRHRIGEGLDMDDMSFQQLRTLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVKSLKQMNGNLLLELKEKCVIHPQFLLHDEGDEESAAAAAAAAVALANGASTLYAFCHQHHSHLNLFSHHSNGEEQPFKTDHDLRLA 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01731 243 Coils Coil 85 105 - -
Gma01g01731 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma01g01731 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma01g01731 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma01g01731 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Gma01g01731 243 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma01g01731 243 Gene3D - 14 106 IPR036879 GO:0003677|GO:0046983
Gma01g01731 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma01g01731 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma01g01731 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 243 - -
Gma01g01731 243 MobiDBLite consensus disorder prediction 224 243 - -
Gma01g01731 243 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 243 - -
Gma01g01731 243 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Gma01g01731 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma01g01731 243 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma01g01731 243 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01731 Gma-Chr1 52999219 53001247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01731 1 219 MADS-box Gene Family AT3G54340 48.636 2.01e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma01g01731 K-box 5.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01731 K09264 - gmx:100784496 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01731 01 52999219 53001247 Gma01g01731 01 52999219 53001247 ECH
Gma11g00671 11 5585419 5588304 Gma01g01731 01 52999219 53001247 ECH