Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01729 ATGCTTTACCAAACTCCCTATCCTCAACCCTTTCAATTTCATCATCCTTTGCCTTCTTCCTTCTCCCCTCTCCTTGCAGTTCCAACCACACCACCTCCTCTCTATCTCCCTTTCCCTCAGGCCGAAAAAGAAATGGAGTGCGTGGAGGCAGCGTTGAAGAGCAATTATAGGAAAGAAATGACCTTAAAACTGAGCCCACAAACCTTCACGGAAGAGGTTAGTGTCCAAAACGGCACAACCTGCGACGACTTTTTCGTTAACGACCTCCTTGACTTCTCTCACGTCGAAGAAGAACCCGAACAACAAGAAGACACTCCTTGTGTCTCCCTTCAGCATGAAAACCCAAGCCACGAGCCCTGTACTTTCAAAGACGATTATGCCTCTGTGCCCACTAGCGAGCTTAGCGTCTTGGCGGATGACTTGGCGGACTTGGAGTGGCTGTCTCATTTCGTGGAGGATTCCTTCTCGGAATTCTCTGCGGCCTTCCCCACCGTAACGGAGAACCCAACAGCATGCCTTAAAGAGGCAGAGCCTGAACCGGAAATCCCGGTTTTCTCTTTCAAAACCCCGGTTCAGACCAAAGCAAGAAGCAAGCGAACCAGAAACGGTCTTCGTGTTTGGCCATTCGGTTCACCTTCCTTCACCGATTCTTCCTCAAGCTCCACCACCTCTTCCTCTTCCTCTTCTTCACCCTCTAGCCCCTTGCTAATTTACACCCAAAGCCTCGACCACCTGTGCTCCGAGCCAAATACCAAAAAAATGAAGAAAAAACCCTCTTCCGATACCCTGGCGCCGCGAAGGTGCAGTCATTGCGGCGTGCAGAAAACCCCTCAGTGGAGAACTGGGCCGCTAGGCCCAAAAACACTATGCAACGCGTGTGGGGTCCGCTTCAAGTCGGGCCGGCTCTTACCCGAATACAGGCCTGCTTGTAGCCCAACATTTTCAAGTGAATTACACTCGAACCATCATCGTAAAGTGCTCGAGATGCGGCAAAAGAAGGAGACAGTTTCTGTGGATGAGACTGGTTTTGCCCCTGCTCATGTTGTTCCCAGTTTCTGA 1059 0.509 MLYQTPYPQPFQFHHPLPSSFSPLLAVPTTPPPLYLPFPQAEKEMECVEAALKSNYRKEMTLKLSPQTFTEEVSVQNGTTCDDFFVNDLLDFSHVEEEPEQQEDTPCVSLQHENPSHEPCTFKDDYASVPTSELSVLADDLADLEWLSHFVEDSFSEFSAAFPTVTENPTACLKEAEPEPEIPVFSFKTPVQTKARSKRTRNGLRVWPFGSPSFTDSSSSSTTSSSSSSSPSSPLLIYTQSLDHLCSEPNTKKMKKKPSSDTLAPRRCSHCGVQKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRQKKETVSVDETGFAPAHVVPSF 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01729 352 PANTHER GATA TRANSCRIPTION FACTOR 45 335 - -
Gma01g01729 352 MobiDBLite consensus disorder prediction 213 234 - -
Gma01g01729 352 Gene3D - 264 338 IPR013088 GO:0006355|GO:0008270
Gma01g01729 352 ProSiteProfiles GATA-type zinc finger domain profile. 262 298 IPR000679 GO:0006355|GO:0043565
Gma01g01729 352 SMART GATA_3 262 316 IPR000679 GO:0006355|GO:0043565
Gma01g01729 352 Pfam GATA zinc finger 268 302 IPR000679 GO:0006355|GO:0043565
Gma01g01729 352 CDD ZnF_GATA 267 315 IPR000679 GO:0006355|GO:0043565
Gma01g01729 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 264 324 - -
Gma01g01729 352 PANTHER GATA TRANSCRIPTION FACTOR 45 335 - -
Gma01g01729 352 ProSitePatterns GATA-type zinc finger domain. 268 293 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01729 Gma-Chr1 52982223 52983795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01729 49 352 C2C2-Gata Transcription Factor Family AT5G66320 50.294 4.99e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma01g01729 GATA 1.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01729 - - gmx:100783966 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01729 01 52982223 52983795 Gma01g01729 01 52982223 52983795 ECH