Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01728 atggccaacctcgacctcgacccattccagacaagcaTCTTAATCCTCGTCCCAATAGCACTCCTGGTGGCGTTACTATCTCGTACTCGTCGAAGAGCACCCTACCCACCAGGCCCAAAGGGTTTACCAATCATAGGAAACATGTTAATGATGGAGCAGCTAACCCACCGCGGCCTCGCCAACCTGGCCAAACACTACGGCGGCATCTTCCACCTCCGCATGGGGTTCCTCCACATGGTCGCCATCTCCGACCCCGTCGCCGCGCGTCAGGTTCTCCAAGTCCAAGACAACATCTTCTCCAACCGCCCAGCCACCATCGCCATCAGCTACCTTACCTACGACCGCGCCGACATGGCTTTTGCCCACTAcggccccttctggcgccagatgcggaaactctgcgtcatgaagctcttcagccgcaagcgcgccgagtcctggcagtcagtccgcgatgaggtcgacgccgccgttcgcgccgtcgctagcagcgtcggaaagcccgtcaacattggagaattagtgtttaacctcaccaagaacatcatctaccgcgccgcgttcgggtcgagttcccaagaaggccaggacgagttcattaaaatactgcaggagttctccaagctctttggcgcgtttaatattgcggattttataccctatctcgggtgcgtggatccacaaggtttgaactcgagactcgctagggcacgtggcgcgctcgatagcttcattgataagatcatcgacgagcacgtgcataagatgaagaatgataagagcagtgaaattgttgatggagaaacggacatggtggatgagttgctggcgttctacagcgaggaggcgaagttgaacaatgaatcggacgatttgcagaactctatcagactcactaaggataacatcaaggctatcattatgGACGTGATGTTCGGAGGCACGGAAACGGTAGCGTCAGCGATCGAGTGGGCCATGGCGGAGCTCATGAGAAGCCCAGAAGATCAAAAGCGGGTCCAACAAGAGCTGGCGGATGTAGTGGGCCTGGACCGTCGGGCCGAAGAGTCCGATTTCGAGAAACTCACTTATCTCAAATGTGCCCTCAAAGAGACCCTCCGCCTCCACCCTCCGATCCCGCTCCTCCTCCACGAGACGGCGGAGGACGCGACGGTCGGCGGTTACCTCGTCCCCAAGAAGGCGCGTGTCATGATCAACGCGTGGGCCATTGGGAGGGACAAGAACAGCTGGGAGGAACCCGAGACCTTCAAGCCCGCCCGGTTTCTTAAACCGGGCGTGCCCGATTTCAAAGGGAGCAACTTCGAGTTCATTCCATTCGGGTCGGGTCGCAGGTCCTGCCCCGGGATGGTGTTGGGGCTCTACGCGCTCGAGTTGGCGGTGGCGCACCTCCTTCACTGCTTCACGTGGGAATTGCCAGATGGGATGAAGCCAAGTGAGATGGACATGGGTGACGTGTTCGGACTCACCGCTCCAAGATCCACGCGACTCATTGCTGTGCCAACCAAGCGCGTGGTGTGCCCTCTCTTTTAA 1548 0.3643 MANLDLDPFQTSILILVPIALLVALLSRTRRRAPYPPGPKGLPIIGNMLMMEQLTHRGLANLAKHYGGIFHLRMGFLHMVAISDPVAARQVLQVQDNIFSNRPATIAISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWQSVRDEVDAAVRAVASSVGKPVNIGELVFNLTKNIIYRAAFGSSSQEGQDEFIKILQEFSKLFGAFNIADFIPYLGCVDPQGLNSRLARARGALDSFIDKIIDEHVHKMKNDKSSEIVDGETDMVDELLAFYSEEAKLNNESDDLQNSIRLTKDNIKAIIMDVMFGGTETVASAIEWAMAELMRSPEDQKRVQQELADVVGLDRRAEESDFEKLTYLKCALKETLRLHPPIPLLLHETAEDATVGGYLVPKKARVMINAWAIGRDKNSWEEPETFKPARFLKPGVPDFKGSNFEFIPFGSGRRSCPGMVLGLYALELAVAHLLHCFTWELPDGMKPSEMDMGDVFGLTAPRSTRLIAVPTKRVVCPLF 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01728 515 Pfam Cytochrome P450 36 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma01g01728 515 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 445 454 IPR017972 GO:0005506|GO:0016705
Gma01g01728 515 PANTHER CYTOCHROME P450 FAMILY FERULATE HYDROXYLASE 3 515 - -
Gma01g01728 515 PRINTS P450 superfamily signature 313 330 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma01g01728 515 PRINTS P450 superfamily signature 366 377 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma01g01728 515 PRINTS P450 superfamily signature 443 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma01g01728 515 Gene3D Cytochrome P450 28 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma01g01728 515 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma01g01728 515 PRINTS E-class P450 group I signature 87 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma01g01728 515 PRINTS E-class P450 group I signature 178 196 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma01g01728 515 PRINTS E-class P450 group I signature 302 319 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma01g01728 515 PRINTS E-class P450 group I signature 322 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma01g01728 515 PRINTS E-class P450 group I signature 365 383 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma01g01728 515 PRINTS E-class P450 group I signature 405 429 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma01g01728 515 PRINTS E-class P450 group I signature 442 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma01g01728 515 PRINTS E-class P450 group I signature 452 475 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma01g01728 515 PANTHER CYTOCHROME P450 84A1-RELATED 3 515 - -
Gma01g01728 515 Coils Coil 282 302 - -
Gma01g01728 515 SUPERFAMILY Cytochrome P450 36 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01728 Gma-Chr1 52955648 52958447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01728 7 514 Monolignol Biosynthesis Gene Families AT4G36220 73.674 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01728 K09755 - gmx:100783430 1000.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00673 11 5621615 5624755 Gma01g01728 01 52955648 52958447 ECH
Gma01g01728 01 52955648 52958447 Gma01g01728 01 52955648 52958447 ECH