Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01726 ATGGAACCGCAGCTTCAGCCCAAGCTGGAGCCCGCGCCAGAGCTTGTGAGCGCTGGCGCTGAGGATTCCGAGAAGTCGCATGTCAGTGATGTCACGGAGGTTCGCCACGTTGCCATGGCTGAGGCAAACGCCGGTTGTTGCGCTTCCGTTTTGAAACGGAAGCGTGGCCGTCCGGCCAAGGGAAGCCGCGTTCCGAAAGGGATGACTCCGCCGTCGAGGCAGAAAAAGGAAGAAGAGGATGTTTGCTTCATATGCTTCGACGGTGGAAGCCTTGTTCTCTGTGATCGCCGTGGATGCCCTAAAGCGTATCATCCCTGGTGTATTAAGCGAGACGAAGCCTTTTTTCGCTCGAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCGCTTGTGGGAAGGGATCGCATTATATGTGCTATACTTGTACCTATTCTTTGTGCAAGAGATGCACAAAAAATGCCGATTTTGTCTCTATCAGAGAAAATAAAGGTTTATGTGGAATATGCAAGAGGACTATAATGCTGATAGAGAATTGTGCCCAGGGTGATAAGGCGGAGTGTGAGGTGGATTTTGATGACAAGAGCAGCTGGGAGTATCTTTTCAAGGTGTACTGGATGTATTTGAAAGAGAAGCTATCTTTGACATTTGATGAGATCCTTCAAGCTAAAAATCCGTGCAAAGGAGTTGCAAGATTAGAAGCATCTGGTGTTGCGGTGGATGTTTCATCATTACTCCTTTCTCCAAAGATGGAGCTGCCAATCAACAATTTTGCGAATGATAAACCGTGGCATTATCAGGATCCAACTGGGAAGGTTCAAGGACCTTTCTCTTTATTGCAGCTGTATAAGTGGAATGCTTGTGGATATTTTCCTTCAGATCTCAGAATATGGAGGGTAGACGAGACACAAAATAACTCTATATTCTTAACTGATGTGCTGAATGGGAAGTGTTCAAAAAATGTGTCATTGCCAAACAACAGCCAACAGCTGTCTTTGGGAACCAATAGTACATTGGAAAATAAAGAAAATAGTCAGGATGGTGGTGAGAATGAGAACAATGCGACAAGGAATGGAAATTCTGCAAACCATCAAATTGTTGAGCAGTGTGAGGAGCAAAAAGTGGCTGATACTTATACACAATCTAATGGTAAAGATGAATCTGTAAGGAGCAATGGTTGGAACTCTCAGTCTCCAGGTTTGACTATACAAGCAGATGGGAATAACAATGAGGGGCAAAGTGGAAATTCTGAAAGGATGGAGGAGTCACCCAAATGTGAAATTTCTTGTCATGACATCCCCCATGTATACACTTCACTGCCTTCAACTGCATTTTCTGAGAAACTGAACGAGAATCCTTCTGATAAGTTAACAGAAGTTCATAAGATTGAAGTAATGTCTGAAGATAATGGAAATTCTGTCTTGAACAGAGTTTCTGAGGGTCAAAGTAATAGTGGGCAAAGTTGTCAGAAACAATCAGACAGTGAGGAGAATTCAGGGCTATCTTCTGGTCAGAACTGGAGATGCCCTGATGTAACTAATCCAGTATGTAACATATCTACATGGCTATCAATCTTTGGTGAACCAAATGATTTGGATGAGTCAGTTTCAGATCTGTTGGCTGAAGTGGAGGCAATGGAGTCACTTGGGGGCCTGGAATCTCCCACTTCAATCATGAAATGTGGTGAGGAGTTGACTGACGGTTCTATAACTGATTGTCTTAGTTTTGCAGATGCGCTTAGCCCAATGCTTGATGCAGGTAAGGGTGATGCACTAAGCTCCTCAGGTGATTTATACTTACCATCTCAAACCACAACACCAGATGAACCGTTTAAGCAAGCAGATGTATATCATCCTCAAAAAATATCCGGGGAGCATTCAACAAAGAGTTCAGAAGTTGAGTCTACTTTCTCTAGGATAAGCTGGAATCCAATTATTCAATATTCCTGGGATCCACCTAATTGTTGA 1965 0.4361 MEPQLQPKLEPAPELVSAGAEDSEKSHVSDVTEVRHVAMAEANAGCCASVLKRKRGRPAKGSRVPKGMTPPSRQKKEEEDVCFICFDGGSLVLCDRRGCPKAYHPWCIKRDEAFFRSKAKWNCGWHICSACGKGSHYMCYTCTYSLCKRCTKNADFVSIRENKGLCGICKRTIMLIENCAQGDKAECEVDFDDKSSWEYLFKVYWMYLKEKLSLTFDEILQAKNPCKGVARLEASGVAVDVSSLLLSPKMELPINNFANDKPWHYQDPTGKVQGPFSLLQLYKWNACGYFPSDLRIWRVDETQNNSIFLTDVLNGKCSKNVSLPNNSQQLSLGTNSTLENKENSQDGGENENNATRNGNSANHQIVEQCEEQKVADTYTQSNGKDESVRSNGWNSQSPGLTIQADGNNNEGQSGNSERMEESPKCEISCHDIPHVYTSLPSTAFSEKLNENPSDKLTEVHKIEVMSEDNGNSVLNRVSEGQSNSGQSCQKQSDSEENSGLSSGQNWRCPDVTNPVCNISTWLSIFGEPNDLDESVSDLLAEVEAMESLGGLESPTSIMKCGEELTDGSITDCLSFADALSPMLDAGKGDALSSSGDLYLPSQTTTPDEPFKQADVYHPQKISGEHSTKSSEVESTFSRISWNPIIQYSWDPPNC 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01726 654 Gene3D - 262 318 IPR035445 -
Gma01g01726 654 SMART gyf_5 261 316 IPR003169 GO:0005515
Gma01g01726 654 MobiDBLite consensus disorder prediction 1 30 - -
Gma01g01726 654 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 171 IPR013083 -
Gma01g01726 654 SUPERFAMILY GYF domain 259 313 IPR035445 -
Gma01g01726 654 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 251 523 - -
Gma01g01726 654 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 513 635 - -
Gma01g01726 654 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 12 233 - -
Gma01g01726 654 MobiDBLite consensus disorder prediction 374 416 - -
Gma01g01726 654 MobiDBLite consensus disorder prediction 472 505 - -
Gma01g01726 654 CDD PHD5_NSD 81 126 - -
Gma01g01726 654 SMART PHD_3 81 127 IPR001965 -
Gma01g01726 654 CDD GYF 263 315 IPR003169 GO:0005515
Gma01g01726 654 ProSitePatterns Zinc finger PHD-type signature. 82 142 IPR019786 -
Gma01g01726 654 Pfam GYF domain 263 306 IPR003169 GO:0005515
Gma01g01726 654 MobiDBLite consensus disorder prediction 374 424 - -
Gma01g01726 654 MobiDBLite consensus disorder prediction 323 358 - -
Gma01g01726 654 SUPERFAMILY FYVE/PHD zinc finger 56 126 IPR011011 -
Gma01g01726 654 MobiDBLite consensus disorder prediction 54 73 - -
Gma01g01726 654 ProSiteProfiles GYF domain profile. 260 314 IPR003169 GO:0005515
Gma01g01726 654 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 251 523 - -
Gma01g01726 654 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 513 635 - -
Gma01g01726 654 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 12 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01726 Gma-Chr1 52940562 52944720 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01726 - - gmx:102667485 1356.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00677 11 5649530 5656662 Gma01g01726 01 52940562 52944720 ECH
Gma01g01726 01 52940562 52944720 Gma01g01726 01 52940562 52944720 ECH