Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01725 ATGGAGCAACCGCTTCAACCGCAGCCGGAGACCGCCGCGGTCGGCGCTAGGGATTTGGAGCAGTCGCGGCTGGTCGGAGTTCCCGTGGCGGAGAGAGCGGGAAACAGTTGCGCAGCGAATTTGCAGGTGACCGTCGTGGACGGTGGTGCCGTTTTTAAACGGAAGCGCGGTCGGCCGGCCAAGGGAGCGCCGAAAGTGGCGCCTCCTGTGAGGCAACAGCAGGACGAGGAGGACGTTTGTTTTATTTGCTTCGACGGTGGCAGCCTCGTTCTCTGTGATCGCCGGGGATGTCCAAAAGCGTATCATCTCGCGTGTATTAAGCGAGACGAAGAGTTTTTTCGATCAAAGGCCAAGTGGAATTGCGGTTGGCATATATGTAGCGTTTGTCAGAAGTCGTCACATTATATGTGCTATACTTGCCCGTACTCTTTGTGTAAGGGATGCACAAAAGATGCTGATTTTGTTTGTGTCAGAGAGAATAAAGGTTTGTGCGGAATATGCATGAGGACTATAATGATGATTGAGAACATAGCCCAGGGAAATAAGGAAAAGTGTGAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGATGTATTTGAAAGGGAAGCTATCTTTAACATTTGATGAGCTCCTTCAAGCTAAAAATCCATGGAAAGGTGCTGCTCCTATGAGTTATAAGATTCAAAGTCCCCATGAACTTTATCATCTTAGAGATGACAAAGGTTCTGGCTCAGAGAACTCCTGTATAGACATAGAATCAAATAATTTGAAGAACAAGAAGCCCAAGAGACAGCCAAAGCTTCTTGATAAGGGTGATTGCTTGGATAGGATAACTTCTGGTGGTGACAGTGGTGTGTCTTTGCCTGAATGCACAAAATGGGCAACAAAGGAGCTTCTAGAGTTTGTTGCACATATGAAAAATGGTGATACATCTCTCCTGTCTCAATTTGATGTCCAGACTCTCTTGCTGGAGTATGCAAATAAAAATAATCTCCGTGATCCTCAACAGAAGTCACAAATTGTTTGTGACTCTAGACTTTTAAATTTGTTTGGAAAAACACGTGTTGGCCACATTGAAATGCTAAAGCTCCTTGAGCCCCACTTTCTTTTAAAAGACAATGGCCCTGCAGAAAATACTTTTGGAGCGGGAATTATTAATGCTGTTGCTAGTGAAGGGGAGGCCATTGACAATTACAATAAACAGTTGATGTTGGTTGATGACAAGAGATGTAAGACACATAATCCAGATGCATATGCTGCTATAGATGTTCACAACATTAACTTGATCTACATGCGGCGAAGTCTGATGGAGAATCTAACTGAAGATACTGAAAAGATTCATGAGAAGGTTGTTGGTTCATTTGTGCGGATAAGAATATCTAGCAATGATCAAAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCCGAACCTTACAAAATTGGCACAAGAACAACAGATATTAAGCTTGAAATTTTAAACTTAAACAGGAAGGAGGTCATATCCATTGCTGAAATTTCTAATCAGGAGTTCTCTGAGGATGAATGCAAGCGGTTGCGTCAGAGTATAAAATATGGGCTCTCAAAGAGATTGACTGTGGGAGAGATTCTAAACAAAGCAGTGACACTTCAAGCAATTAGAGTTAATGATTTGCTGGAAGCTGAGATATTACGGCTTAATCATCTTCGTGATAGAGCAAGTGAAAAGGGGCATAGAAAAGAATATCCTTTACCATTTACTACTTTATTCTTCAAATATGTGGAGAAGTTGCAGCTACTAAACTCTCCGGAGGAACGTCAACGCAGGCAGCATGAAATTCCAGATGTACACTCCGACCCCAATTTGGATTCAATGTTTGAGTCTGATGAAGATGATGGAGAGTCAGATGAAAGGAAGCAAGATAGCAATATATTTTCAAAATATCTTGGGTTTGATAGAAAAGAGAGGGGTTCTATTTTTCCAAGAATTTCAAATGGCGCCTCCAACGACATGGGAGGTAAAACACAAGACTTGCCTGCTACCCGAGAACCGGTTGGGAATACATGCACAGTGAAGAATAATATCAACTGTGATGATACAGCTATTGATGATAGCACTAATGCAGTTGTGAAATCAGAAGTGTCCAGTGTTGCACCGGACATTTCATCACCGCTTCTCTTTACTGGGATGCAGCAGTCACTGAATGACTTTTTGAATGATAGATCATGGCATTATCAGGATCCAACTGGGAAGATTCAAGGACCTTTTTCTATGTTGCAGCTATACAAGTGGAATGCAAGTGGATGTTTCCCTCCAGATCTCCGAATATGGAGGGTAGGTGAGAAACAAGATAACTCTATACTGTTAACCGATGCACTAAGTGGGAAGTGTTCCAAAAATGTGTCATTGCCATTCAACAGCCAATTGCTCTCTTTAGGGGTCAGTGTTACATTGGATAATAAAGATAATAGTCAGGATGCTGGGAAGAATGGAAAGAATGAAATTTCTGCAGATGGCCAAATTATAGAACAGAGCAAGGAACAAAAGCCACAGGTGGATAATACCTCTACCCAGTCTGATGGCAAAGACGAACCTGTTAGGAGCAATGGAGGGCATGGCCAACTGCATGTATACCCTTCACTACTGCCAACTGCCATTCCTGAGAAATTGAATGAGGATCCTTCTGATAAATTAAGGAAAGGCCATGGGATTGTGGGAAATTCCGAAAATAGAAATAATGGCTCGATCAGGACATCTGATGGGCAGAGTAATAGTGGGCATAGTTATCAGAAGCAATCAGATAGTGAAGAGAATTCAGGGAAatcttctggacagacctggagacatcctaatGCAATCATTGGTGAGCCCAATGATTTTGATGAATCCGTTTCAGATCTGTTGGCAGAAGTGGAAGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGCGAGGATTTAACTGAAGGTTCTAAAAATGATTGTCTCAGTTTTGTTGCAGAGCTTAGCCCAATGCTTGATGCGGGTAAAGGTGATGCACTGAGCTCTACTGGTGATTTAAACTTACCATCTCAGCCGACAGCAGCAGAGGAACCATTACGGCAAGCAGATGTACATCACCATCATCATCAAAGAATTTCTGCGGAGCATCCTTCAAGAAGTTCTAAAGTTGAGGTGGGTACAAAGAACGGTGTTTCAGGTAATCAATGGGATTCAGGCTCAGAAAATTCACCCATTGTTCCATCCCCTGGAACCTTGGGCCTGGCTATAGACACCACTTGGAGACTTGGGTTAGAGAATACACACTTGGGATGGAGTGGAATAGATCAAGGAAATGCAAATGTGGGTTGGGGAGTAGGACAGACGGCAGTGCAGGAAAACAGGAGTTCTAGTTCATACACTTCTGCAGTAACTCCAGGCTTTGGGGATAGCCAAACAAAATATGGCAGTGATCGATTTTCTGTGTCCAGAGATCGGGGTTTTCAAGGTCATAGTAGGGAATCAGGTTTGAGTAGAAGCAGAATTCCATATAACAGGCAACCGTCATATGGTGTTGGAAATGGAGCATCATATAAGCCTCTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTATTGTAAGAAGGGAGCATCCTGTGATTACTGGCACCCATGA 3696 0.4264 MEQPLQPQPETAAVGARDLEQSRLVGVPVAERAGNSCAANLQVTVVDGGAVFKRKRGRPAKGAPKVAPPVRQQQDEEDVCFICFDGGSLVLCDRRGCPKAYHLACIKRDEEFFRSKAKWNCGWHICSVCQKSSHYMCYTCPYSLCKGCTKDADFVCVRENKGLCGICMRTIMMIENIAQGNKEKCEVDFDDKSSWEYLFKVYWMYLKGKLSLTFDELLQAKNPWKGAAPMSYKIQSPHELYHLRDDKGSGSENSCIDIESNNLKNKKPKRQPKLLDKGDCLDRITSGGDSGVSLPECTKWATKELLEFVAHMKNGDTSLLSQFDVQTLLLEYANKNNLRDPQQKSQIVCDSRLLNLFGKTRVGHIEMLKLLEPHFLLKDNGPAENTFGAGIINAVASEGEAIDNYNKQLMLVDDKRCKTHNPDAYAAIDVHNINLIYMRRSLMENLTEDTEKIHEKVVGSFVRIRISSNDQKQDMYRLVQVVGTSKVAEPYKIGTRTTDIKLEILNLNRKEVISIAEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKAVTLQAIRVNDLLEAEILRLNHLRDRASEKGHRKEYPLPFTTLFFKYVEKLQLLNSPEERQRRQHEIPDVHSDPNLDSMFESDEDDGESDERKQDSNIFSKYLGFDRKERGSIFPRISNGASNDMGGKTQDLPATREPVGNTCTVKNNINCDDTAIDDSTNAVVKSEVSSVAPDISSPLLFTGMQQSLNDFLNDRSWHYQDPTGKIQGPFSMLQLYKWNASGCFPPDLRIWRVGEKQDNSILLTDALSGKCSKNVSLPFNSQLLSLGVSVTLDNKDNSQDAGKNGKNEISADGQIIEQSKEQKPQVDNTSTQSDGKDEPVRSNGGHGQLHVYPSLLPTAIPEKLNEDPSDKLRKGHGIVGNSENRNNGSIRTSDGQSNSGHSYQKQSDSEENSGKSSGQTWRHPNAIIGEPNDFDESVSDLLAEVEAMESLGGLESPTSIMKCGEDLTEGSKNDCLSFVAELSPMLDAGKGDALSSTGDLNLPSQPTAAEEPLRQADVHHHHHQRISAEHPSRSSKVEVGTKNGVSGNQWDSGSENSPIVPSPGTLGLAIDTTWRLGLENTHLGWSGIDQGNANVGWGVGQTAVQENRSSSSYTSAVTPGFGDSQTKYGSDRFSVSRDRGFQGHSRESGLSRSRIPYNRQPSYGVGNGASYKPLPKGQRVCKFYESGYCKKGASCDYWHP 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01725 1231 SUPERFAMILY SWIB/MDM2 domain 300 376 IPR036885 -
Gma01g01725 1231 SUPERFAMILY FYVE/PHD zinc finger 62 124 IPR011011 -
Gma01g01725 1231 SUPERFAMILY GYF domain 742 798 IPR035445 -
Gma01g01725 1231 MobiDBLite consensus disorder prediction 608 629 - -
Gma01g01725 1231 Pfam SWIB/MDM2 domain 305 375 IPR003121 -
Gma01g01725 1231 Coils Coil 561 581 - -
Gma01g01725 1231 MobiDBLite consensus disorder prediction 911 954 - -
Gma01g01725 1231 SMART rtf1 427 537 IPR004343 GO:0003677
Gma01g01725 1231 MobiDBLite consensus disorder prediction 847 964 - -
Gma01g01725 1231 MobiDBLite consensus disorder prediction 1045 1067 - -
Gma01g01725 1231 ProSitePatterns Zinc finger PHD-type signature. 80 140 IPR019786 -
Gma01g01725 1231 ProSiteProfiles Zinc finger C3H1-type profile. 1206 1231 IPR000571 GO:0046872
Gma01g01725 1231 SMART PHD_3 79 125 IPR001965 -
Gma01g01725 1231 MobiDBLite consensus disorder prediction 1177 1196 - -
Gma01g01725 1231 MobiDBLite consensus disorder prediction 847 869 - -
Gma01g01725 1231 ProSiteProfiles Zinc finger PHD-type profile. 77 143 IPR019787 -
Gma01g01725 1231 MobiDBLite consensus disorder prediction 1045 1088 - -
Gma01g01725 1231 MobiDBLite consensus disorder prediction 1068 1088 - -
Gma01g01725 1231 MobiDBLite consensus disorder prediction 1138 1201 - -
Gma01g01725 1231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 168 IPR013083 -
Gma01g01725 1231 SUPERFAMILY CCCH zinc finger 1206 1230 IPR036855 GO:0046872
Gma01g01725 1231 CDD PHD5_NSD 79 124 - -
Gma01g01725 1231 Pfam GYF domain 748 790 IPR003169 GO:0005515
Gma01g01725 1231 SUPERFAMILY Plus3-like 428 556 IPR036128 GO:0003677
Gma01g01725 1231 SMART gyf_5 746 801 IPR003169 GO:0005515
Gma01g01725 1231 MobiDBLite consensus disorder prediction 1138 1162 - -
Gma01g01725 1231 MobiDBLite consensus disorder prediction 608 646 - -
Gma01g01725 1231 ProSiteProfiles SWIB/MDM2 domain profile. 294 377 IPR003121 -
Gma01g01725 1231 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 15 956 - -
Gma01g01725 1231 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 965 1231 - -
Gma01g01725 1231 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 15 956 - -
Gma01g01725 1231 MobiDBLite consensus disorder prediction 895 909 - -
Gma01g01725 1231 Gene3D - 428 557 IPR036128 GO:0003677
Gma01g01725 1231 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 965 1231 - -
Gma01g01725 1231 ProSiteProfiles Plus3 domain profile. 427 560 IPR004343 GO:0003677
Gma01g01725 1231 CDD SWIB-MDM2_like 300 375 - -
Gma01g01725 1231 CDD GYF 745 800 IPR003169 GO:0005515
Gma01g01725 1231 Pfam Plus-3 domain 432 535 IPR004343 GO:0003677
Gma01g01725 1231 Gene3D SWIB/MDM2 domain 293 382 IPR036885 -
Gma01g01725 1231 Gene3D - 747 803 IPR035445 -
Gma01g01725 1231 SMART swib_2 297 380 IPR019835 -
Gma01g01725 1231 ProSiteProfiles GYF domain profile. 745 799 IPR003169 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01725 Gma-Chr1 52929994 52936464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01725 77 157 PHD Transcription Factor Family AT4G14920 34.568 2.86e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gma01g01725 Plus-3 1.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01725 - - aprc:113869503 2026.52