Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01682 ATGCCTCGAACTCTGGCTTTGGCTGGCAAGTACCAAAGTTTAATCCTCACTGCTTTAGTTTTGGTTTCTTTGGAGAGAATAGAGGAAGTGAAGGCCAAATATCCAAAAGTTTCATATGCCGACCTTTACCAGCTAGCTGGTGTTGTTCCAGTAGAGGTCACTGGGGGTCCAACTATGGACTTTGTTCCAGGGAGAAAAGATTCATTGGAATCTCCAGTAGAAGGGTGTCTTCCGGATGCCGAACAAGATCGTTCTGACTTTCATGGTCAATGGACAAAGGACCCTTTGAAGTTTGATAACTCCTATTTTGTAGAATTACTGAGAGGGGAGTCAAAAGATTTACTGAAGCTTCCCACAGACAAGGCTCTAGTTGAAGATCCTAATTTCCGCAAGTATGTTGAACTATATGCGAAGGATGAAGATGCTTTTTTCGCAGATTATGCAACCTCATACAAAAAACTCAGAGCTCGGCTTCATTTTCAGGAATCATCGTTCCATATTGGCCAAGGGAGTTACAGGAATTGCTATTGTCTTAACCGCTGTGATCTTGGGTTACTTACGTGA 564 0.4273 MPRTLALAGKYQSLILTALVLVSLERIEEVKAKYPKVSYADLYQLAGVVPVEVTGGPTMDFVPGRKDSLESPVEGCLPDAEQDRSDFHGQWTKDPLKFDNSYFVELLRGESKDLLKLPTDKALVEDPNFRKYVELYAKDEDAFFADYATSYKKLRARLHFQESSFHIGQGSYRNCYCLNRCDLGLLT 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01682 187 Gene3D Peroxidase, domain 2 83 151 - -
Gma01g01682 187 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 22 82 IPR044831 GO:0004601|GO:0034599
Gma01g01682 187 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 80 164 IPR044831 GO:0004601|GO:0034599
Gma01g01682 187 SUPERFAMILY Heme-dependent peroxidases 24 160 IPR010255 GO:0004601|GO:0006979|GO:0020037
Gma01g01682 187 Pfam Peroxidase 24 80 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gma01g01682 187 Pfam Peroxidase 91 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gma01g01682 187 PANTHER L-ASCORBATE PEROXIDASE 3 22 82 - -
Gma01g01682 187 PANTHER L-ASCORBATE PEROXIDASE 3 80 164 - -
Gma01g01682 187 PRINTS Plant ascorbate peroxidase signature 55 67 IPR002207 GO:0004601|GO:0006979|GO:0020037
Gma01g01682 187 PRINTS Plant ascorbate peroxidase signature 11 35 IPR002207 GO:0004601|GO:0006979|GO:0020037
Gma01g01682 187 PRINTS Plant ascorbate peroxidase signature 36 54 IPR002207 GO:0004601|GO:0006979|GO:0020037
Gma01g01682 187 Gene3D - 24 77 - -
Gma01g01682 187 PRINTS Haem peroxidase superfamily signature 91 106 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gma01g01682 187 PRINTS Haem peroxidase superfamily signature 55 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gma01g01682 187 PRINTS Haem peroxidase superfamily signature 37 54 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01682 Gma-Chr1 52485248 52490083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01682 95 179 Peroxidase AT4G16270 37.209 1.22e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01682 K00434 - gmx:100806101 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02370 04 54104668 54110714 Gma01g01682 01 52485248 52490083 ECH
Gma01g01682 01 52485248 52490083 Gma01g01682 01 52485248 52490083 ECH