Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma01g01673 | ATGACTCTCAAAGGTTTGGTATCACTTGTCATTAATTTAATTGGCTTAGCTGAGGGAACAAGGAACAATGATGCCCCTTTACCTTCTTACATGCTATCCAGCCATATAGAAAGTAACAAGCAACAATCATCTGAATCTACATCAGCATCAGCATCCAATTTTAATGAGGATAGTTGGTGTTGTGTGTGCTTGTCAAGGTTAAAGGCCAAAGATGAAATCCGTGTCCTTCCTTGCTCGCACAAATTCCATAAGAGTTGTGTAAATAGATGGCTTAAGGGTCGCCACAAAACGTGTCCACTCTGCCGTTTCTCGATGGGAGCCGAGGAGAAGTCTCATCGTGCAGAAATGTTCACTGAAGAGATGTTAATATGGTTTTCTTCTTTCCATGTAGCTGGTATGTAA | 402 | 0.4129 | MTLKGLVSLVINLIGLAEGTRNNDAPLPSYMLSSHIESNKQQSSESTSASASNFNEDSWCCVCLSRLKAKDEIRVLPCSHKFHKSCVNRWLKGRHKTCPLCRFSMGAEEKSHRAEMFTEEMLIWFSSFHVAGM | 133 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma01g01673 | 133 | CDD | mRING-H2-C3H2C2D_ZSWM2 | 60 | 102 | - | - | |
| Gma01g01673 | 133 | SMART | ring_2 | 60 | 101 | IPR001841 | - | |
| Gma01g01673 | 133 | Pfam | Ring finger domain | 60 | 102 | IPR001841 | - | |
| Gma01g01673 | 133 | PANTHER | TARGET OF ERK KINASE MPK-1 | 8 | 118 | - | - | |
| Gma01g01673 | 133 | SUPERFAMILY | RING/U-box | 53 | 106 | - | - | |
| Gma01g01673 | 133 | ProSiteProfiles | Zinc finger RING-type profile. | 60 | 102 | IPR001841 | - | |
| Gma01g01673 | 133 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 107 | IPR013083 | - | |
| Gma01g01673 | 133 | PANTHER | GB|AAF27103.1 | 8 | 118 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma01g01673 | Gma-Chr1 | 52414244 | 52414920 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma01g01673 | 56 | 106 | C3H Transcription Factor Family | AT1G80400 | 50.980 | 8.06e-14 | 65.1 |