Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma01g01667 | ATGGATTTTGCGCCGAATCCGTGCCCTTTGCGTTCTTCTTCGTTCGTGAATCTCGTTGAGAGGATTAAACAGCTTGGTACCCTCGCCGTTTCTGCAGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGTTGGCACTTTGTTGGGGGCCTTGACTGGAGCTTTGATAGGACAAGAAACTGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGTGCCATATCAGGAGCCGTTTTCTCCATTGAAGTGTTTGAATCCTCTCTTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTGATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATTGGTCCGGCCATGTTTAGTGCTGTTCAAAGTCAGATGGGTGCTGTTGAAACCAGCTTTGATGAGGTTCAAAACATCTTTGACACCGGTGGTTCCAAAGGTTTGTCTGGAGATTTGGTTGACAAAATCCCCAAAATCAAAATTACAACTGATAACAATGTTGATGCATCTGGTGATAGAGTTTCTTGTTCAGTTTGCCTGCAGGACTTTATGCTTGGAGAGACAGTAAGAAGCTTGCCTCATTGCCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTCTTCAGACATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA | 699 | 0.4535 | MDFAPNPCPLRSSSFVNLVERIKQLGTLAVSAVIGNIFSAILTFCFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCVLYLIDVIVSLLSGRLVRERIGPAMFSAVQSQMGAVETSFDEVQNIFDTGGSKGLSGDLVDKIPKIKITTDNNVDASGDRVSCSVCLQDFMLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma01g01667 | 232 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN-RELATED | 10 | 232 | - | - | |
| Gma01g01667 | 232 | ProSiteProfiles | Zinc finger RING-type profile. | 187 | 229 | IPR001841 | - | |
| Gma01g01667 | 232 | CDD | RING-H2_PA-TM-RING | 187 | 229 | - | - | |
| Gma01g01667 | 232 | Pfam | Ring finger domain | 186 | 229 | IPR001841 | - | |
| Gma01g01667 | 232 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 147 | 232 | IPR013083 | - | |
| Gma01g01667 | 232 | SUPERFAMILY | RING/U-box | 175 | 232 | - | - | |
| Gma01g01667 | 232 | Pfam | YMGG-like Gly-zipper | 46 | 81 | IPR027367 | - | |
| Gma01g01667 | 232 | SMART | ring_2 | 187 | 228 | IPR001841 | - | |
| Gma01g01667 | 232 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 10 | 232 | IPR044523 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma01g01667 | Gma-Chr1 | 52351220 | 52353598 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma01g01667 | 12 | 232 | C3H Transcription Factor Family | AT5G66070 | 76.018 | 1.86e-118 | 335 |