Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01634 ATGGGAGGTGACGCCACTGCCGCCGCTGAGAGTGCGACCGCGGAGTCGAACGCCGCAAATGGAGTCAACATCAACATTCGCTGCTCCAATGGTTCCAAGTTTTCCGTTCAGATTGGCCTTGATTCCACCATCAGATCCTTCAAGGACGCGGTTGCACGCAACTGTGACATATCCGCGGATCAACAGCGCCTGATTTACAAGGGCCGGATTCTCAAGGATGATCAAACCCTCCAAAGCTATGGTTTGGAGGCTGATCACACTGTTCATTTGGTTCGTGGTTTTGCTCCATCTAACACTACTGGTGGAACTAATAGTGTTGGTGGCGGCAATACCACAACTGCTAACACGAGAGGGGCTGGTGCTAATGAGGGTGGGGGTTTAGGAGGGCCAGGATTTGGAGCTTCACTGTTTCCTGGACTTGGTGGTAACAATGGGATGGGGGGCGGTGGTCTCAATGGTCTATTTGGAGCAGGCTTTCCGGATCTTGAACAAATGCAGCAACCATTTTTGTCAAATCCCAATTTAATGAGAGATATAATGAACACACCTGCTATGCAGAATTTAATAAATAATCCTGACATAGTGCGGAATCTTATAATGAATAACCCGCAGATGCAAGAACTAATGGATAGGAACCCCGAGCTGGCACACATACTTAATGATCCCAGCACTCTTCGTCAGACACTTGAAGCTACAAGGAACCCTGAGATCATGCGCGAAATGATGAGGAATACAGATAGAGCAATGAGCAACATTGAATCTTCTCCTGAAGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCGTTTTTAAATGCCACTACAATGGCTGGTAACACTGGAAATGATGCTGCAGCAGTCAGGAACCAATCCACAAATCCCTCAACTACTAATTCTGAAGCTACTTCCCCTGTACCCAATACGAACCCACTTCCTAATCCTTGGTCCTCTACTGGAACTGGAGGAGGCCAGAATAACACCAGAAGGTCAACTACTACTGGTGGGGAAGCTCGACAGTCAACACCCACTGGTCTAGGAGGGCTTGGACTGCCAGATCTTGAAGGCATGTTGGGTGGGACTGGGATGCCAGATGCTGCTATGTTGACCCAGTTAATGCAAAACCCAGCCATTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAGATTCTTGGGGTCAATAACGAGCAGCGTGGCATGCCTGATTTGAATTCTCTAAGGGAGGTGATGCAAAACCCAGAGTTTCTACGCCTGTTTTCCTCACCCGAGACACTGCAGCAACTCTTGTCTTTTCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACAATCAACACAGGAACCAGGTCAAACAGGTGGAGGCACTGGACCGATGAACAACTTGGGGCTGGAGATGTTATCAAGCATGTTTGGTGGACTCGGAGCTGGTAGCCTGGCTGTTCCTAACAGATCAAATGAGCCGCCGGAGCAATTGTATGCCACCCAACTTTCTCAGCTTCAGGAGATGGGTAGCAGGTGGTAA 1542 0.4831 MGGDATAAAESATAESNAANGVNINIRCSNGSKFSVQIGLDSTIRSFKDAVARNCDISADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPSNTTGGTNSVGGGNTTTANTRGAGANEGGGLGGPGFGASLFPGLGGNNGMGGGGLNGLFGAGFPDLEQMQQPFLSNPNLMRDIMNTPAMQNLINNPDIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNDAAAVRNQSTNPSTTNSEATSPVPNTNPLPNPWSSTGTGGGQNNTRRSTTTGGEARQSTPTGLGGLGLPDLEGMLGGTGMPDAAMLTQLMQNPAISQMMQSILSNPQTMNQILGVNNEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQSTQEPGQTGGGTGPMNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGSRW 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01634 513 ProSiteProfiles Ubiquitin domain profile. 22 91 IPR000626 GO:0005515
Gma01g01634 513 MobiDBLite consensus disorder prediction 446 467 - -
Gma01g01634 513 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 3 510 - -
Gma01g01634 513 CDD Ubl_Dsk2p_like 22 94 - -
Gma01g01634 513 MobiDBLite consensus disorder prediction 96 117 - -
Gma01g01634 513 SUPERFAMILY Ubiquitin-like 15 108 IPR029071 -
Gma01g01634 513 SMART ubq_7 22 93 IPR000626 GO:0005515
Gma01g01634 513 MobiDBLite consensus disorder prediction 277 353 - -
Gma01g01634 513 SMART CBM 148 189 IPR006636 -
Gma01g01634 513 SMART CBM 202 241 IPR006636 -
Gma01g01634 513 SMART CBM 356 397 IPR006636 -
Gma01g01634 513 SMART CBM 400 435 IPR006636 -
Gma01g01634 513 PANTHER UBIQUILIN 3 510 - -
Gma01g01634 513 MobiDBLite consensus disorder prediction 446 464 - -
Gma01g01634 513 Pfam Ubiquitin family 24 91 IPR000626 GO:0005515
Gma01g01634 513 Gene3D - 8 106 - -
Gma01g01634 513 MobiDBLite consensus disorder prediction 277 343 - -
Gma01g01634 513 Gene3D - 197 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01634 Gma-Chr1 52048795 52054721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01634 22 91 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 1.21e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01634 K04523 - gmx:100797539 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01634 01 52048795 52054721 Gma01g01634 01 52048795 52054721 ECH
Gma01g01634 01 52048795 52054721 Gma11g00774 11 6467128 6472259 GST
Gma01g01634 01 52048795 52054721 Gma16g01107 16 27878994 27893676 PCT
Gma01g01634 01 52048795 52054721 Gma02g00380 02 3970822 3977430 PCT
Gma16g01107 16 27878994 27893676 Gma01g01634 01 52048795 52054721 PCT
Gma02g00380 02 3970822 3977430 Gma01g01634 01 52048795 52054721 PCT