Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01600 ATGAGTGATGCAAAAGAAAACGAGGTAGCTAGCCAGGGCATGCCCTCGGTCGTGGAAGAAAACCAACAGTTGGTTGATGCTGAGGTTCAAGATCAACCTGAAACTGCCTCTGCTCCTGTTCCAGTAGAGGAAACTTCAAATCATGTTGAAATTACAAAGGAAGAACCATGTGCCGAGGATAAAAATGCAGAACTTGAGGCTGTTTCAGAGGGAATTCCACAAGAAGATGTTCAAAATACTCTTCTCTATGTCCCAGTAGAGTCTGATGCTCAGATTTTGGATAGGACTGAGTCTGAAGAAGCTTCTGTTGCGAAGGTGGAAGCTGATGAATTAGCCCAGAATAATAAGGAGGCCGAGAATAATGATGATGTTCATCAAAACAGTAATGGCAATGTTGAGATGGCTTTGGAGGTGAAGCCTGAAGCCTGTGGAATGGCTGATAGTAAAGCATGTGATAATGGTGACCCTGTGCCTGCAAGTCATAATGAGCTTGCTACGCACCTACCTGCTCCTGCAGATACAAACACTGAAATTATGAATGTATTAGAAGTTGAGAATAAGGCTGACGGAAAGCAAGCTACTGAACCTGCAGATAATGGGAATTCAAATTCAAAGTACATGCTTTTCTTGGATGCTGACCATTCCTATGATGGTAATGAGTCAGGAACAGAGGAGGAGCAGTCAGCATTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGAATTCAAACCTCCCAAATTCTATGGAGAAGGATTAAATTGCCTTAAGCTGTGGAGAGCTGTAACGAGATTGGGTGGCTATGATAAGGTGACTTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAAGACATGTACCACTGTCTCATGGACTTTTCGGGGATTTTATGAGAAGGCACTTCTTGATTATGAAAGACATAAAATAAAAGGTGGTGAGCTGAATGTTCCTGTTGCTTCTCATCCAGAGCCTATAAATATTGAAAATCAGGCCTCTGTATCAGGTAGAGCACGGAGAGATGCTGCAGCACGAGCTATGCAGGGGTGGCACTCACAACGCCTCCTAGGCAATGGTGAAGTTAGTGACCCTATTATTAAGGATAGGAATTCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATATACACAAACGTAAGAAGCCATCTTCACCTTACATGGATAATGCAGTCAAAGCTGCACGCAGTAAACTGTCTAAACCACAATTGGACACAACTGTGATTGATATTGGACCTCCTGCTGATTGGGTAAAAGTGAATGTACAAAAAACTAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTGCTGAGGGAAGAGGTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCTGAACATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACATCCGCGGTGGTGACACTGCATGGGCAGTTGTTTGTTCGTGTCCCGTTTGAACATTTAGAATAG 1563 0.4383 MSDAKENEVASQGMPSVVEENQQLVDAEVQDQPETASAPVPVEETSNHVEITKEEPCAEDKNAELEAVSEGIPQEDVQNTLLYVPVESDAQILDRTESEEASVAKVEADELAQNNKEAENNDDVHQNSNGNVEMALEVKPEACGMADSKACDNGDPVPASHNELATHLPAPADTNTEIMNVLEVENKADGKQATEPADNGNSNSKYMLFLDADHSYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELNVPVASHPEPINIENQASVSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSVSVQKREKQLKSINIHKRKKPSSPYMDNAVKAARSKLSKPQLDTTVIDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEHLE 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01600 520 MobiDBLite consensus disorder prediction 1 72 - -
Gma01g01600 520 SUPERFAMILY ARID-like 219 326 IPR036431 GO:0003677
Gma01g01600 520 MobiDBLite consensus disorder prediction 1 30 - -
Gma01g01600 520 SUPERFAMILY HSP20-like chaperones 429 515 IPR008978 -
Gma01g01600 520 Coils Coil 101 128 - -
Gma01g01600 520 ProSiteProfiles ARID domain profile. 224 315 IPR001606 GO:0003677
Gma01g01600 520 SMART bright_3 225 316 IPR001606 GO:0003677
Gma01g01600 520 CDD ARID 226 311 - -
Gma01g01600 520 CDD ACD_sHsps-like 435 515 - -
Gma01g01600 520 Gene3D - 224 321 IPR036431 GO:0003677
Gma01g01600 520 Pfam Hsp20/alpha crystallin family 437 516 IPR002068 -
Gma01g01600 520 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 12 518 - -
Gma01g01600 520 MobiDBLite consensus disorder prediction 47 66 - -
Gma01g01600 520 SMART ARID_2 221 311 - -
Gma01g01600 520 Pfam ARID/BRIGHT DNA binding domain 227 311 IPR001606 GO:0003677
Gma01g01600 520 Gene3D - 421 520 IPR008978 -
Gma01g01600 520 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 420 520 IPR002068 -
Gma01g01600 520 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 12 518 IPR045147 GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01600 Gma-Chr1 51641642 51646998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01600 205 518 ARID Transcription Factor Family AT1G76510 62.696 5.66e-130 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gma01g01600 HSP20 2.8e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01600 - - gmx:100781627 1021.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01600 01 51641642 51646998 Gma01g01600 01 51641642 51646998 ECH
Gma01g01600 01 51641642 51646998 Gma11g00809 11 6777442 6783720 GST