Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01561 ATGAAGAGCATAAACGACGACGCTTCAACCCAAGATGTCGACCCTCAGAGCGACCACAGCTCCGATTACTTAGCTCACCCTAACTCCCACCCCGAACCCCACCCTCAGCCCCGCCGTCCGCGGGGCTTCGCGGCGGCGCCGGTCACCACCAATACCGGCGGCAAGGGGAAGAAGGAGAGGAAGAAGGAGAAGGAGCGCACCAAGCTCCGCGAGCGACACCGTCGAGCCATCACCAGCCGCATGCTCGCCGGACTCCGCCAGTACGGAAATTTCCCCCTGCCAGCGCGTGCCGACATGAACGACGTACTCGCTGCGCTCGCGCGTGAGGCTGGCTGGGTCGTCGACGCCGACGGCACCACCTACCGCCAGTGCCCCCCTCCTTCCAACGTGGGGTCATTTGCGGCTAGGTCTGTTGAAAGTCAACTCTCCGGTGGTTCTTTGAGGAATTGTTCTGTCAAGGAAACTATTGAGAACCAGACAGCTGTGCTTAGAATTGATGAATGCTTGTCGCCTGCATCCATTGATTCCGTTGTAATTGCAGAAAGGGACTCAAAGAATGAGAAATATACAAATGCTAGACCCATCAATACAGTTGACTGCTTGGAGGCTGATCAGCTTATGCAAGATATTCATTCTGGGGTGCATGAAAATGACTTTACTAGCACGCCATACGTTCCTGTTTATGTAAAGCTTCCAGCTGGTATTATTAACAAATTTTGCCAGTTGATTGATCCTGAAGGCATAAAGCAGGAGCTCATCCATATCAAGTCTTTAAATGTAGATGGTGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGCTCACAGAAATATGTCTGGTCTGGTTATAGGGAGCTTTTTAACATTATTAGAGAATTCAAACTGAAGTTACAGGTTGTTATGGCATTTCATGAATGTGGAGGGAACGATTCTAAACGAGTTCTCAAAGGCAGAACTGGAATTGAGGTCTATTTTGATATGATGAGAAGCTTTCGGACAGAGTTTGATGACCTGTTTGCAGAAGGTCTGATTTCTGCTGTGGAGGTTGGACTTGGAGCATCTGGAGAGCTAAAATATCCTTCTTTCTCAGAAAGAATGGGATGGAGGTATCCTGGTATCGGTGAGTTTCAGTGCTATGATAAATACCTGCAAAATAGTCTGCGCAGAGCAGCCAAATTGCGTGGTCACTCTTTCTGGGCTAGAGGACCTGATAATGCTGGACATTACAATTCTATGCCACATGAAACTGGATTCTTTTGTGAGCGAGGCGATTATGACAACTATTATGGACGCTTCTTCTTACACTGGTACTCCCAGACATTAATAGACCATGCAGATAACGTTTTGTCTCTTGCAACCCTTGCTTTTGAGGAAACAAAAATAATTGTCAAGGTAGTTCCTGCTGTATACTGGTGGTATAAGACTCCTAGTCATGCAGCAGAGTTGACAGCAGGATATCACAATCCAACATATCAGGATGGATACTCTCCTGTGCTTGAGGTTCTGAGAAAACATGCTGTCACCATGAAATTTGTCTGCTTAGGATTTCATCTTTCCAGTCAGGAAGCTTATGAACCGTTGATTGATCCAGAGGGTTTGAGTTGGCAGGTGCTAAACTCAGCTTGGGATCGTGGGTTGATGGCTGCTGGAGAGAATGCACTCCTTTGCTATGGTAGAGAAGGATACAAGAGATTGGTTGAGATGGCAAAGCCCAGAAATGATCCTGATTGCCGGCACTTCTCTTTCTTTGTTTATCAGCAACCATCTTTGCTGCAGGCAAATGTTTGCTTGTCTGAACTGGATTTCTTCGTCAAATGCATGCATGGTGAGATTGCAATGTCATTTGTAACAGTGCTTTTTGCAAGCTTGGTAATTCCAAAGTCTACGGCATTCCATCTTCTAATCTATCTAACGGATAAAATTGGCAATTATGAAATTAAAGCTAATTCATCAGCTGGATGGTGGTCACCTGCATAA 1983 0.466 MKSINDDASTQDVDPQSDHSSDYLAHPNSHPEPHPQPRRPRGFAAAPVTTNTGGKGKKERKKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQCPPPSNVGSFAARSVESQLSGGSLRNCSVKETIENQTAVLRIDECLSPASIDSVVIAERDSKNEKYTNARPINTVDCLEADQLMQDIHSGVHENDFTSTPYVPVYVKLPAGIINKFCQLIDPEGIKQELIHIKSLNVDGVVVDCWWGIVEGWSSQKYVWSGYRELFNIIREFKLKLQVVMAFHECGGNDSKRVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLISAVEVGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQNSLRRAAKLRGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLIDHADNVLSLATLAFEETKIIVKVVPAVYWWYKTPSHAAELTAGYHNPTYQDGYSPVLEVLRKHAVTMKFVCLGFHLSSQEAYEPLIDPEGLSWQVLNSAWDRGLMAAGENALLCYGREGYKRLVEMAKPRNDPDCRHFSFFVYQQPSLLQANVCLSELDFFVKCMHGEIAMSFVTVLFASLVIPKSTAFHLLIYLTDKIGNYEIKANSSAGWWSPA 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01561 660 MobiDBLite consensus disorder prediction 1 24 - -
Gma01g01561 660 Pfam Glycosyl hydrolase family 14 242 311 IPR001554 GO:0000272|GO:0016161
Gma01g01561 660 Pfam Glycosyl hydrolase family 14 316 578 IPR001554 GO:0000272|GO:0016161
Gma01g01561 660 PANTHER - 312 616 IPR001554 GO:0000272|GO:0016161
Gma01g01561 660 PANTHER - 60 313 IPR001554 GO:0000272|GO:0016161
Gma01g01561 660 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 302 323 IPR001554 GO:0000272|GO:0016161
Gma01g01561 660 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 497 520 IPR001554 GO:0000272|GO:0016161
Gma01g01561 660 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 535 557 IPR001554 GO:0000272|GO:0016161
Gma01g01561 660 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 462 478 IPR001554 GO:0000272|GO:0016161
Gma01g01561 660 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 479 490 IPR001554 GO:0000272|GO:0016161
Gma01g01561 660 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 259 273 IPR001554 GO:0000272|GO:0016161
Gma01g01561 660 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 280 298 IPR001554 GO:0000272|GO:0016161
Gma01g01561 660 MobiDBLite consensus disorder prediction 54 71 - -
Gma01g01561 660 Gene3D Glycosidases 215 313 - -
Gma01g01561 660 Gene3D Glycosidases 314 624 - -
Gma01g01561 660 PANTHER BETA-AMYLASE 8 312 616 - -
Gma01g01561 660 PANTHER BETA-AMYLASE 8 60 313 - -
Gma01g01561 660 MobiDBLite consensus disorder prediction 1 71 - -
Gma01g01561 660 Pfam BES1/BZR1 plant transcription factor, N-terminal 54 201 IPR008540 -
Gma01g01561 660 SUPERFAMILY (Trans)glycosidases 219 617 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01561 Gma-Chr1 51098132 51116323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01561 14 613 Glycoside Hydrolase AT5G45300 60.565 0.0 783
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Gma01g01561 Glyco_hydro_14 8e-54 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01561 K01177 - gmx:100816365 1200.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01561 01 51098132 51116323 Gma01g01561 01 51098132 51116323 ECH
Gma01g01561 01 51098132 51116323 Gma09g02016 09 45751652 45757537 GST