Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01560 ATGGGGTCCAGTGCCAGCAAGGCCACGTCATCATCGTCCTCTTCGGGGAGTTGCAGGAAGGGTCGATCTAAGGGACACCGAGGTTTCCCATCTTATTGTCTGGGAGCCTCGTCTGGATCTCGTGACATTGATAGTGACGACCAGGTTTGTGATCAGAATAAAGTAAATGGAGAGGATGTGACATACAGTAGTGGCAATGAAATAGATTCAGATGAGGTGAAGACAGAGTCTTTTAGAAAGGTTAAATCTGATAAATCTGATGAAGTGCCTTGTGTGCCTTCCAACATTGACCTTGAGGAGTGGGGCCACACTGCATCCAGAACTGGTAGCAGCTCTGCACATTCTTCTTCAAATCAGTCCTTGAACCCTTCAAGCCGATTCCTTTCTCGCTTTAGCCTTGTTCCTGGTAATATAAGCTTCAGACTTAGCAGAACCACAAGTTTGGGGTCATCTAGGCCTTGCCCGGTTTCTTCAGAGAGTCTCTCAATATTTAACAATGAAGATGAGCTTAATCTGCCTCCAGGGCTTCCTGGCAGCTTGATCAATAGAAATGAAACTCAACACCGTTGTGACTTGCTTAATGCATCTCTTGCTAGTCAAGTGCCTATACAGTGTCATCAAGAAGCTTCCAATAATTTAAGATCCAATACCCTGACATTGGTTTCCCCTGGCAACTTGGTTAGCAGTCGCATTTCTTCTGTTCAGGATGTGGTCAGAGATGGAAATGGTACTAGAGAAGTGCCGGATATGAACTTGTTTTCTCCAAGAATTCATACTGATACAGAAGATATTGAGACTAGACATACTGATAGACGGAATGGAGCTCGAGAGCCTGTTGAACGTAATGTTCGTTTTAGCCGGACATTAAGTGTTGGAAGGCTCCGTGACAGGGTTCTCCGCCGAACAACAGTATCGGACTTCACATTTTGCCCTCTGCAACGAGAGAGAGATGCTAGTCAAGATAATGGAAGACGGGCAGGGGAGAGAGACACAAGACTGTCACCATCTGGTCGTAATGCTACAAATTCTTCTACACCTAGATATCCTCTACCCAGTACACCTAGCTCCTTGTTTGGCATCCAAGACTATGAAGTTGAGACTTCACGATCTAGAGAAACTAGGTATCAGGACCTACTGGAGCATAGGTCCAATTTCCTCGAACGGAGGAGAAGAATACGGTCCCAGGTCCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTATCTGGTCAACATAGAAATGGTCGTTGTGCATGCAGAATCAATAGTCGTGATACCAATTCAAATGATGATACCAATGCAAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTATGGTTTTATCTTCTCGCCCTTCTGTGTCATCTATCGGTTCTGTTCCTGCACCTAATGAAGTTGTGGAATCCTTGCCTGTCAAATTATACACTAAGTTGCACAAACATCAAGAAGAACCTGTACAATGTTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGAGTTCTGCCTTGTCATCATGAATTTCATACAACATGTGTAGACAAGTGGCTGAAGGAGATTCACAGGGTGTGCCCACTATGTCGAGGGGATATCTGTGCATCTGATTCACTGCCAAGGGAGAACTAA 1704 0.4472 MGSSASKATSSSSSSGSCRKGRSKGHRGFPSYCLGASSGSRDIDSDDQVCDQNKVNGEDVTYSSGNEIDSDEVKTESFRKVKSDKSDEVPCVPSNIDLEEWGHTASRTGSSSAHSSSNQSLNPSSRFLSRFSLVPGNISFRLSRTTSLGSSRPCPVSSESLSIFNNEDELNLPPGLPGSLINRNETQHRCDLLNASLASQVPIQCHQEASNNLRSNTLTLVSPGNLVSSRISSVQDVVRDGNGTREVPDMNLFSPRIHTDTEDIETRHTDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRTTVSDFTFCPLQRERDASQDNGRRAGERDTRLSPSGRNATNSSTPRYPLPSTPSSLFGIQDYEVETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCACRINSRDTNSNDDTNARASISRIVMLAEALFEVLDEIHQQSMVLSSRPSVSSIGSVPAPNEVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCVDKWLKEIHRVCPLCRGDICASDSLPREN 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01560 567 MobiDBLite consensus disorder prediction 315 357 - -
Gma01g01560 567 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 567 - -
Gma01g01560 567 MobiDBLite consensus disorder prediction 104 123 - -
Gma01g01560 567 CDD mRING-H2-C3H2C2D_ZSWM2 511 554 - -
Gma01g01560 567 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Gma01g01560 567 SMART ring_2 512 553 IPR001841 -
Gma01g01560 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 475 559 IPR013083 -
Gma01g01560 567 MobiDBLite consensus disorder prediction 1 19 - -
Gma01g01560 567 Pfam Ring finger domain 511 554 IPR001841 -
Gma01g01560 567 MobiDBLite consensus disorder prediction 69 87 - -
Gma01g01560 567 ProSiteProfiles Zinc finger RING-type profile. 512 554 IPR001841 -
Gma01g01560 567 MobiDBLite consensus disorder prediction 317 332 - -
Gma01g01560 567 MobiDBLite consensus disorder prediction 334 357 - -
Gma01g01560 567 MobiDBLite consensus disorder prediction 1 123 - -
Gma01g01560 567 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 567 - -
Gma01g01560 567 SUPERFAMILY RING/U-box 490 559 - -
Gma01g01560 567 MobiDBLite consensus disorder prediction 54 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01560 Gma-Chr1 51088513 51093848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01560 228 561 C3H Transcription Factor Family AT5G45290 62.500 1.19e-121 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01560 - - gmx:100815830 1044.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01560 01 51088513 51093848 Gma01g01560 01 51088513 51093848 ECH
Gma01g01560 01 51088513 51093848 Gma09g02015 09 45744963 45749165 GST
Gma01g01560 01 51088513 51093848 Gma16g00986 16 23335705 23341759 PCT
Gma16g00986 16 23335705 23341759 Gma01g01560 01 51088513 51093848 PCT