Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01559 ATGGAGAATGTGAGAATAAGGCAGTGGTTGAACCTTCTGGTGTGTGCACTGCTGTTGCTGATATCAGAAGCTTCTTATGTGCCAATCACTATTGTTCAGAACGCGGTAGCTAAAGGAGCTGTTTGTTTGGATGGGAGTCCACCAGCTTACCATTTTGATAAGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAGGGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAATCGTCTAGGTTCATCTAAGCAAATGGCGAAGCAAATTGCCTTTTCAGGAATTTTGAACAACAGGGCAATGTTTAATCCAGATTTCTACAACTGGAACAGAATCAAGGTTAGGTATTGTGATGGTTCGTCATTTACTGGTGATGTGGAAGCAGTGAATCCGGTAACTAAGTTGCACTTCAGAGGAGCAAGGATTTTCAATGCTGTCATGGAAGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAATGCTATTATCTCAGGATGCTCAGCCGGAGGATTAACATCAGTACTGCATTGTGATCGATTTCGAGCTCTATTACCTAGAGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGCAAAGGATGTTTTGGGAGAACAACACATTGAGCAGTATTTCAGTCAAGTTGTTGTCACACATGGCTCTGCCAGGAGTTTGCCTCAATCATGCACTTCAAGACTTAGCGCAAAACTGTGCTTTTTCCCACAATATTTGGTGTCACGTATTACTACACCAATCTTCTTTGTAAACGCGGCATACGACTCATGGCAGATTAAGAACATTTTGGCACCGGGTGTTGCTGATCCTGAAGGCCATTGGCATAGCTGCAAGCTTGATATAAACAACTGCTCACCTGATCAACTCGATCTAATGCAAGGCTTCAGGACAGAATTTTTAAGGGCTATAACTGTGCTTGGCAACTCTtcatctaaaggaatgttcatagactcttgctatgcccactgccaaactgaaatgcaggagacatggttGAGAAGTGACTCTCCAGAGCTGAAAAAGACAACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGACCTTTCCATCAGATAGATTGCCCTTACCCTTGCAACCCCACTTGTCACAACCGCGTTTTCGATCCACAAGAAGACCACCCAGGAAAAAATGTGACCGCGAAAGGAACATCAGATGCATCAGCCACAAAGTCCAATTTCCCCAAACTAACAAACAAGGTACGATGGCTTGAACTTGTGTGCATTAATCGTGGAATCAGTGGGCTTCTACTAACGTTGGTTCTTCTGGTCATCCTATAA 1350 0.4104 MENVRIRQWLNLLVCALLLLISEASYVPITIVQNAVAKGAVCLDGSPPAYHFDKGFGSGINNWLVAFEGGGWCNNVTTCLARKTNRLGSSKQMAKQIAFSGILNNRAMFNPDFYNWNRIKVRYCDGSSFTGDVEAVNPVTKLHFRGARIFNAVMEDLLAKGMKNARNAIISGCSAGGLTSVLHCDRFRALLPRGARVKCLSDAGYFINAKDVLGEQHIEQYFSQVVVTHGSARSLPQSCTSRLSAKLCFFPQYLVSRITTPIFFVNAAYDSWQIKNILAPGVADPEGHWHSCKLDINNCSPDQLDLMQGFRTEFLRAITVLGNSSSKGMFIDSCYAHCQTEMQETWLRSDSPELKKTTIAKAVADWFYERRPFHQIDCPYPCNPTCHNRVFDPQEDHPGKNVTAKGTSDASATKSNFPKLTNKVRWLELVCINRGISGLLLTLVLLVIL 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01559 449 PANTHER NOTUM-RELATED 3 408 IPR004963 GO:0016787
Gma01g01559 449 Pfam Pectinacetylesterase 22 371 IPR004963 GO:0016787
Gma01g01559 449 MobiDBLite consensus disorder prediction 393 413 - -
Gma01g01559 449 PANTHER PECTIN ACETYLESTERASE 3 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01559 Gma-Chr1 51077384 51085267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01559 5 398 Carbohydrate Esterase AT4G19420 60.839 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01559 K19882 - gmx:100818146 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01559 01 51077384 51085267 Gma01g01559 01 51077384 51085267 ECH
Gma01g01559 01 51077384 51085267 Gma16g00985 16 23257712 23312176 PCT
Gma16g00984 16 23201872 23208259 Gma01g01559 01 51077384 51085267 PCT