Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01550 ATGGGAAGAGGAGGAGAAGGAGTTAAAAAGAGCAAAGAAAATAAAAAGGGCGTCATTTTGGTGTGCTGTGTGAGCTGTGACGGGTTGCGAATGCGTCGGTCGCACCTCAACCTGCATTTCTCTCTCACACACTCGCATCTCAGATCGAATTCGAGGTCACTGACTGATTCTGCGCTGTTGATTGCTGCTATGGGCATTTGTCTTTTGAAATGGCAATGGCCGTGGCTTCTTTATGTTCTGCTGATACATGTTgtaatcaataaaagcgaagcaatcacccccgatgGTGAGGTGCTGCTCAGCTTTAGGACATCAGTTGTTAGTTCTGATGGTATCCTATTACAGTGGAGGCCAGAGGATCCTGACCCATGTAAATGGAAAGGAGTGAAATGTGATCTGAAAACCAAAAGAGTAACACATCTGAGTCTATCTCACCATAAGTTAAGTGGGTCTATATCACCTGACCTTGGGAAGCTAGAGAATCTGAGGGTTCTTGCTCTTCATAACAACAACTTCTATGGGTCAATTCCACCAGAGTTGGGAAATTGCACTGAATTGGAGGGAATATTTTTACAGGGTAATTACCTTAGTGGAGCGATTCCAAGTGAAATAGGAAACCTTTCACAGCTTCAAAATTTGGATATATCAAGCAATTCCCTCAGTGGGAATATTCCTGCATCACTTGGGAAGTTGTATAATCTCAAAAATTTCAATGTATCAACCAATTTTCTGGTCGGACCTATACCTTCTGATGGTGTCCTTGCCAACTTTACTGGAAGCTCCTTTGTTGGGAATCGTGGTTTGTGTGGAGTGAAAATTAATTCAACATGTAGAGATGATGGTTTGCCGGATACCAATGGTCAATCTACTAACTCAGACCAAAATCAAATAGGAAAGAAGAAATATTCTGGCCGGCTGCTCATCAGTGCATCAGCAACTGTGGGAGCTCTACTTTTGGTGGCACTTATGTGCTTCTGGGGTTGTTTTCTTTATAAAAAGTTTGGCAAAAACGACAGAATAAGTCTGGCAATGGATGTTGGTGCAGGTGCATCAATTGTGATGTTTCATGGAGACTTACCATATTCTTCAAAAGACATCATCAAGAAACTAGAGACTTTGAATGAGGAACACATAATAGGGATAGGGGGGTTTGGAACTGTTTACAAGCTAGCAATGGATGATGGGAATGTGTTTGCTTTGAAAAGGATTGTAAAGTTGAATGAGGGGTTTGATCGTTTTTTTGAGAGGGAGCTTGAAATTCTTGGTAGCATCAAACACCGTTATCTAGTGAACTTACGAGGATATTGCAATTCACCCACGTCAAAGTTGTTAATATATGATTACCTACCAGGTGGTAGTCTTGACGAAGCACTTCATGAAAGAGCTGAGCAACTAGACTGGGATTCACGCTTGAATATAATCATGggagctgcaaaagggcttgcctacttgcaccatgattgttcccccaggatcatacaccgagacataaaatctagcaacattttacttgacggaaacttggatgctcgggtctctgattttggacttgccaaacttctggaggatgaagaatctcacatcaccactattgttgctggaacgtttggttatctagctccagAGTATATGCAAAGTGGCAGAGCAACtgagaagtctgatgtgtatagctttggtgtgttgacacttgaaGTGCTGAGTGGAAAGCGGCCAACAGACGCAGCATTCATTGAAAAGGGTCTCAATATTGTTGGTTGGTTGAATTTTCTAATTACAGAAAATAGGCCGAGGGAAATTGTTGACCCTCTATGTGAAGGGGTGCAAATGGAGAGCCTTGATGCCTTGCTCTCTGTGGCTATTCAGTGCGTTTCCTCAAGTCCAGAGGATCGACCCACCATGCACCGAGTGGTGCAATTGCTTGAATCCGAGGTCGTAACTCCATGCCCTAGTGACTTCTATGACTCCAACTCCGATTAG 1977 0.3677 MGRGGEGVKKSKENKKGVILVCCVSCDGLRMRRSHLNLHFSLTHSHLRSNSRSLTDSALLIAAMGICLLKWQWPWLLYVLLIHVVINKSEAITPDGEVLLSFRTSVVSSDGILLQWRPEDPDPCKWKGVKCDLKTKRVTHLSLSHHKLSGSISPDLGKLENLRVLALHNNNFYGSIPPELGNCTELEGIFLQGNYLSGAIPSEIGNLSQLQNLDISSNSLSGNIPASLGKLYNLKNFNVSTNFLVGPIPSDGVLANFTGSSFVGNRGLCGVKINSTCRDDGLPDTNGQSTNSDQNQIGKKKYSGRLLISASATVGALLLVALMCFWGCFLYKKFGKNDRISLAMDVGAGASIVMFHGDLPYSSKDIIKKLETLNEEHIIGIGGFGTVYKLAMDDGNVFALKRIVKLNEGFDRFFERELEILGSIKHRYLVNLRGYCNSPTSKLLIYDYLPGGSLDEALHERAEQLDWDSRLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKSDVYSFGVLTLEVLSGKRPTDAAFIEKGLNIVGWLNFLITENRPREIVDPLCEGVQMESLDALLSVAIQCVSSSPEDRPTMHRVVQLLESEVVTPCPSDFYDSNSD 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01550 658 SMART serkin_6 373 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g01550 658 PANTHER RECEPTOR-LIKE PROTEIN 55 66 658 - -
Gma01g01550 658 Gene3D Ribonuclease Inhibitor 93 278 IPR032675 -
Gma01g01550 658 SUPERFAMILY L domain-like 93 258 - -
Gma01g01550 658 Gene3D Transferase(Phosphotransferase) domain 1 449 646 - -
Gma01g01550 658 Pfam Protein kinase domain 375 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g01550 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 492 504 IPR008271 GO:0004672|GO:0006468
Gma01g01550 658 ProSitePatterns Protein kinases ATP-binding region signature. 379 405 IPR017441 GO:0005524
Gma01g01550 658 Pfam Leucine rich repeat N-terminal domain 94 132 IPR013210 -
Gma01g01550 658 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FEI 1 66 658 IPR031071 GO:0004672|GO:0005524|GO:0030244
Gma01g01550 658 ProSiteProfiles Protein kinase domain profile. 373 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g01550 658 Gene3D Phosphorylase Kinase; domain 1 346 448 - -
Gma01g01550 658 SUPERFAMILY Protein kinase-like (PK-like) 358 640 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01550 Gma-Chr1 51006197 51017205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01550 64 649 Receptor kinase-like Gene Family AT2G35620 75.939 0.0 894
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Gma01g01550 Pkinase 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01550 - - gmx:100819230 1145.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01550 01 51006197 51017205 Gma01g01550 01 51006197 51017205 ECH
Gma01g01550 01 51006197 51017205 Gma09g02005 09 45660803 45669752 GST