Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01541 ATGGAGTCCAGTGAGGATGGGAGCATGTCATTTAGAGAGTTCCATGCGAATGGAAGCCGCATGGTTACATCTGAAGTTGAGGCCAAGCTTGATCAAGGAAATATTCAAGAGGCAGAAGAGGCATTGCGAGAAGGGTTGTCGCTCAATTTTGAGGAAGCAAGAGCTCTTCTTGGAAAGTTGGAGTATCAGAGAGGTAATGTAGAAGGTGCTCTTCGTGTGTTTGATGGGATTGATCTCCAAGCTGCCATACAGAGATTGCAACCTTCCTTTTCTGAAAAAACACCAGTGAAGAAAGGTCGCACTCGCACTGAATCACCCTCCTCAGTCTCTCAGCATGCTGCTAGTTTGGTGCTTGAAGCCATCTACTTAAAATCCAAGTCTCTGCAAAAACTGGGGAAATTTACTGAGGCTGCTAATGACTGTAGACGTATTCTTGATGCCGTTGAGAAGATATTTTATCTGGATAATCCTGATATTCAAGTGGATAATAGATTGCAAGAAATAGTCAGCCATGCAGTTGAGCTCCTTCCAGAGCTTTGGAAACAAGCTGGTTGCTATGATGAGGCAATCTCTGCTTATAGGCGAGCCCTTCTCGGTCAATGGAACCTTCATAATGATTTCTGTGCAAGAATTCAGAAGTCATTTGTTATTTTTTTGCTATACAGTGGGGTGGAGGCAAGTCCACCTAGTTTAGCAGTTCAGATTGATGGATCATATGTGCCTAAAAATAATCTTGAAGAGGCTATTCTGCTATTGATGAATTTCTTGAAAGATTTTTGCCTTGGGAAGATGAAATGGGATCCTTCAGTCATGGAACACCTGACTTTTGCACTTTCTATATGTGGTGGAACTTCTATTTTAGCAAAGCAACTTGAAGAATTGAGGCCTGGAGTATACCATCGAATTGATTGTTGGAATACTTTAGCTTTATGTTATAGTGGAGCTGGACAAAATGACAGTGCTTTGAATCTGCTAAGGAAGTCTTTGCACAAACATGAACGACCAAATGACCTTACATCATTGTTGTTAGCAGCCAAGATCTGCAGTGAGGATCCCTATCTTGCTGCTGAGGGAGTGAACCATGCACAAAGGGCAATCAGTAATGCTCATGGCCCAAATGAGCATTTAAAAGGTGTTGCTCTTCGGATGTTGGGACTTTGTCTGGGAAAGCAAGCTAAGGTTGCTTCCTCTGACTTTGAGAGGTCTCACCTTCAGTCCAAAGCTCTTGAGTCATTGGTGGCAGCAATTAGATTGGAGCCAAACAATTCTGATCTGATTTTTGAACTGGCTGTTCAGTATGCAGAGCACCGAAATTTGCCTGCTGCTTTGCGTTCTGCAAGGCATTTCTTTAACAAAACAGGCGGTTCTGTATCGAAATCTTGGAGATTGCTTGCTCTAATTTTGTCTGCACAACAAAGATTTTCAGAAGCTGAAGTGGTGACAGATGCTGCTTTAGATCAAACTGCAAGATGGGAGCAGGGGCCTCTGCTTAGGCTGAAAGCAAAGTTGATGATCTCCCAATCACGACCCATGGATGCTATTGAAACTTATCGATACCTTCTTGCATTGGTTCAAGCCCAGAAGAAATCCTTTGGGCCTCTCCAAATTAGTTCAAAGGTTGAGGAGGACAAAGTAAATGAATTTGATACTTGGCATGGTCTGGCAAATTTATATGCTAGTCTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGTCAGGGAGTTGAAGGAATACTCTGCAGCATTGATGCACACTGAAGGTGTTTTGTTTGAAGGACGTGGGCAAAATGAAGAAGCTCTTTGTGCTACTATTAATGCTATACTACTTGAACCAAACTATGTTCCATGCAAGATCTCGATGGGTGCTTTGATTCAAAAAATGGGTTCAAAGTATTTGGCTGTTGCAAGAAGCTCACTGTCTGATGCACTCCGAATAGAACCCACAAACCGCAAGGCTTGGTATTACTTGGGATTGCTTCATAAACATGAGGGCCGAATAAGTGATGCTGCTGAATGCTTCCAAGCAGCTTCCATGCTTGAAGAATCTGATCCCATCGAAAGTTTCAGCTCTATACCTTGA 2085 0.4264 MESSEDGSMSFREFHANGSRMVTSEVEAKLDQGNIQEAEEALREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPSFSEKTPVKKGRTRTESPSSVSQHAASLVLEAIYLKSKSLQKLGKFTEAANDCRRILDAVEKIFYLDNPDIQVDNRLQEIVSHAVELLPELWKQAGCYDEAISAYRRALLGQWNLHNDFCARIQKSFVIFLLYSGVEASPPSLAVQIDGSYVPKNNLEEAILLLMNFLKDFCLGKMKWDPSVMEHLTFALSICGGTSILAKQLEELRPGVYHRIDCWNTLALCYSGAGQNDSALNLLRKSLHKHERPNDLTSLLLAAKICSEDPYLAAEGVNHAQRAISNAHGPNEHLKGVALRMLGLCLGKQAKVASSDFERSHLQSKALESLVAAIRLEPNNSDLIFELAVQYAEHRNLPAALRSARHFFNKTGGSVSKSWRLLALILSAQQRFSEAEVVTDAALDQTARWEQGPLLRLKAKLMISQSRPMDAIETYRYLLALVQAQKKSFGPLQISSKVEEDKVNEFDTWHGLANLYASLSHWKDAEICLQKVRELKEYSAALMHTEGVLFEGRGQNEEALCATINAILLEPNYVPCKISMGALIQKMGSKYLAVARSSLSDALRIEPTNRKAWYYLGLLHKHEGRISDAAECFQAASMLEESDPIESFSSIP 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01541 694 SUPERFAMILY TPR-like 49 197 IPR011990 GO:0005515
Gma01g01541 694 PANTHER PROTEIN NPG1 1 693 IPR043376 -
Gma01g01541 694 SUPERFAMILY TPR-like 497 682 IPR011990 GO:0005515
Gma01g01541 694 Gene3D Tetratricopeptide repeat domain 24 210 IPR011990 GO:0005515
Gma01g01541 694 Gene3D Tetratricopeptide repeat domain 238 528 IPR011990 GO:0005515
Gma01g01541 694 Gene3D Tetratricopeptide repeat domain 529 688 IPR011990 GO:0005515
Gma01g01541 694 ProSiteProfiles TPR repeat profile. 652 685 IPR019734 GO:0005515
Gma01g01541 694 PANTHER CALMODULIN-BINDING PROTEIN 1 693 - -
Gma01g01541 694 SMART tpr_5 548 581 IPR019734 GO:0005515
Gma01g01541 694 SMART tpr_5 458 491 IPR019734 GO:0005515
Gma01g01541 694 SMART tpr_5 652 685 IPR019734 GO:0005515
Gma01g01541 694 SMART tpr_5 118 151 IPR019734 GO:0005515
Gma01g01541 694 SMART tpr_5 302 335 IPR019734 GO:0005515
Gma01g01541 694 SMART tpr_5 582 615 IPR019734 GO:0005515
Gma01g01541 694 Pfam Tetratricopeptide repeat 28 75 - -
Gma01g01541 694 SUPERFAMILY TPR-like 118 443 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01541 Gma-Chr1 50942232 50946879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01541 12 693 Calmodulin-binding Proteins AT2G43040 71.574 0.0 966
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01541 K21843 - gmx:100811018 1365.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01541 01 50942232 50946879 Gma09g01986 09 45482398 45488335 GST