Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01533 ATGTTTACATGCATAGCGTGCACGAAGCAAGCGGCGAAGGAGAAGGAAGAAGAGGGTGAGAGTGGCACGCCGAGTACAAATAAAGAAGCCGTCAAAAGCCTGAGTGCTCAGTTAAAGGATATGGCACTGAAGTTTTCAGGTGCCTACAAGCAGTGCAAACCTTGCACAGGGTCTAGTACCTACAAGAAAGGACAGAGGCCATATCCTGACTTTGACACCATTTCAGAAGGGGTTCCATACCCTTATATTGGAGGTGCAAGCTCAACTTCAACCCCTGCTTGGGACTTCACAAGCTCCAATTTCCTTGGTGCTAGATCAGACCAAAGATTTATGGGGGGATTCAGTGGTGATAGGACCCCTAGAGGGCCTCAATCAGCACCAGCCTGTGATGTAGTTGTTGAGGATGAGGATGAAACCAAGGAGTGGATGGCACAGGTGGAACCAGGGGTTCACATTACCTTTGTGTCTCTTCCTAATGGAGGAAATGATCTCAAAAGAATTCGCTTTAGCCGAGAGATTTTTGACAAGTGGCAAGCTCAAAAATGGTGGGGTGAGAATTATGACAGAATCATGGAACTTTACAACGTGCAGAGATTCAATCGACAAGCTCTTAATACTCCTTCAAGATCTGAGGATGAGCAAAGAGATTCTTCTTACTCAAGAATGACATCTGGACATGATAGCCCCATGCACTCAATGTCTTTAAAGGACTGGACACCCAGGAATCACTATAAACCCTCAGGGAATAACCCTTCTGAAGCTATGGATCAAGGTGGTGGTGGCCAAAATTTCCATGCAGCTTCATCCGTGGAAGCATCAAGGACAACCACCTCTTCTAGAGACGAGCGTTCAATGAGCAATGCCAGTGATTTGGAGACAGAATGGATAGAGCAAGATGAACCTGGAGTCTACATTACAATCAGGCAATTAGCTGACGGAACAAAGGAGCTTCGCCGTGTCAGATTCAGCCGGGAGAGATTTGGGGAGGGACATGCAAAGAAATGGTGGGAAGACAACAGAGAAAGAATACAAGCTCAATATCTTTGA 1047 0.4623 MFTCIACTKQAAKEKEEEGESGTPSTNKEAVKSLSAQLKDMALKFSGAYKQCKPCTGSSTYKKGQRPYPDFDTISEGVPYPYIGGASSTSTPAWDFTSSNFLGARSDQRFMGGFSGDRTPRGPQSAPACDVVVEDEDETKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREIFDKWQAQKWWGENYDRIMELYNVQRFNRQALNTPSRSEDEQRDSSYSRMTSGHDSPMHSMSLKDWTPRNHYKPSGNNPSEAMDQGGGGQNFHAASSVEASRTTTSSRDERSMSNASDLETEWIEQDEPGVYITIRQLADGTKELRRVRFSRERFGEGHAKKWWEDNRERIQAQYL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01533 348 PANTHER BREVIS RADIX-LIKE PROTEIN-RELATED 1 348 - -
Gma01g01533 348 MobiDBLite consensus disorder prediction 243 292 - -
Gma01g01533 348 Pfam Transcription factor BRX N-terminal domain 21 55 IPR027988 -
Gma01g01533 348 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 348 IPR044532 -
Gma01g01533 348 MobiDBLite consensus disorder prediction 10 33 - -
Gma01g01533 348 MobiDBLite consensus disorder prediction 204 294 - -
Gma01g01533 348 ProSiteProfiles BRX domain profile. 293 348 IPR013591 -
Gma01g01533 348 ProSiteProfiles BRX domain profile. 140 195 IPR013591 -
Gma01g01533 348 Pfam Transcription factor regulating root and shoot growth via Pin3 292 347 IPR013591 -
Gma01g01533 348 Pfam Transcription factor regulating root and shoot growth via Pin3 140 194 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01533 Gma-Chr1 50834548 50839753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01533 1 348 Major Intrinsic Protein MIP AT1G31880 64.444 2.00e-156 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01533 - - gmx:100809614 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01533 01 50834548 50839753 Gma01g01533 01 50834548 50839753 ECH
Gma01g01533 01 50834548 50839753 Gma09g01975 09 45396809 45400803 GST