Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01512 ATGGCAGGCTCATCAAATTCAAGGAAGGGAAAAAGTGTGGTTGAAGGCAACAAAACAGTAAAGGAAATTCTATTTAAGGACGAGTTGCAGCTGGAGTTCATTCTGAACGTGGGCATTGTGAAAGACTCTGAGTTGAGCATGCCATATAGGACGAAACTGAGCAATGACAAGTGGAACCTCTTTTTACCAGTGCAAGGTTTTGAAGACATCCTCTTAGGGTTCTTGAAAGAAGGTGAAGATGTCAGAGAGGCCATCTCAGTGACCGTGTATGACAAAGGTGGCCACGAGTTTGATATGATGCTCAAGAAATGGGTGAAGGATTCCAACCATTACTATGTGCTAAACCGAGGCTGGTTCAGTTTCTGCGACCAACAGTGCTTAGGGGAAAACGATCTCGTCGCCTTGCGTACCTTTCGCCATGCAAAATCTGATATGTTATCCTTTGTTGTTACTTTCAAAAGAATGAGGGAGGATTTTGTGGGATTGTTGACACCTAAGGTGGAGGAGGACTTAAGGGGAATACGAGGACTATTTAAAAACCCAGATCGTCGTATCGTTCCACTAGCACCGTCGACCTCCAAGGCTCGAACCACTGTCCTTCCACTCAACTGCACAGTTGCGCTCGTCGGCTCAAGCTACCACCGCAGCACGCCTCAGCCACCGCCAGTTAACAAGGCATGA 681 0.4684 MAGSSNSRKGKSVVEGNKTVKEILFKDELQLEFILNVGIVKDSELSMPYRTKLSNDKWNLFLPVQGFEDILLGFLKEGEDVREAISVTVYDKGGHEFDMMLKKWVKDSNHYYVLNRGWFSFCDQQCLGENDLVALRTFRHAKSDMLSFVVTFKRMREDFVGLLTPKVEEDLRGIRGLFKNPDRRIVPLAPSTSKARTTVLPLNCTVALVGSSYHRSTPQPPPVNKA 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01512 226 ProSiteProfiles B3 DNA-binding domain profile. 45 156 IPR003340 GO:0003677
Gma01g01512 226 CDD B3_DNA 74 154 IPR003340 GO:0003677
Gma01g01512 226 Gene3D - 46 159 IPR015300 -
Gma01g01512 226 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 27 155 IPR005508 GO:0003677
Gma01g01512 226 PANTHER B3 DOMAIN PLANT PROTEIN 27 155 - -
Gma01g01512 226 SUPERFAMILY DNA-binding pseudobarrel domain 59 151 IPR015300 -
Gma01g01512 226 Pfam B3 DNA binding domain 61 142 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01512 Gma-Chr1 50465705 50469198 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01512 51 152 B3 DNA Binding Superfamily AT4G03170 29.126 9.63e-06 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma01g01512 B3 1.1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01512 - K07995 pvu:PHAVU_004G169500g 198.364