Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01509 ATGGCAGATGCAGAGCCCTCATCAGAAAGAGAAATCCTAGCAAGGGAGGAGCAGCAGCTGGATTTCGTGATGAGCGTTGGAATAGTGAAGGAATGTGAGTTGAGCATGCCCTACAGAGCTCAACTCACCGGCGACAAGTCCAACTTGTTCTTGTTGCGAGTGCCAGAGTTTGAAGATATCCTCTTGGATTTCCTGGAGGAAAGGGAAGACGTTAGAGAGGGGATTGAAGTGAATGTGTATGACAGGGGAGGGCACGAGTTCCAGATGATGCTGAGGAAATGCGAGGGGAATGGCAATGTTTTCTACGCGCTGAACCGAGGTTGGCTCAATTTCCTCGACCAGCATTGCTTGAGAGAAAATGATTTCATCTCCTTGCGCACCTTTCGCCATACATTTAACCACAAGTTGTCCTTCGTTGTTACTTACACAAAGATGCAGTAA 441 0.4785 MADAEPSSEREILAREEQQLDFVMSVGIVKECELSMPYRAQLTGDKSNLFLLRVPEFEDILLDFLEEREDVREGIEVNVYDRGGHEFQMMLRKCEGNGNVFYALNRGWLNFLDQHCLRENDFISLRTFRHTFNHKLSFVVTYTKMQ 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01509 146 SUPERFAMILY DNA-binding pseudobarrel domain 45 142 IPR015300 -
Gma01g01509 146 CDD B3_DNA 42 141 IPR003340 GO:0003677
Gma01g01509 146 PANTHER B3 DOMAIN PLANT PROTEIN 14 145 - -
Gma01g01509 146 Pfam B3 DNA binding domain 64 132 IPR003340 GO:0003677
Gma01g01509 146 Gene3D - 39 146 IPR015300 -
Gma01g01509 146 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 14 145 IPR005508 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01509 Gma-Chr1 50443429 50443869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01509 34 144 B3 DNA Binding Superfamily AT4G03170 31.897 1.02e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma01g01509 B3 5.5e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01509 - K24316 pvu:PHAVU_004G169500g 164.851