Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01489 ATGTCGGTGACTCTGCACACAAACCTAGGCGACATCAAGTGTGAAATCTTCTGCGACGAGGTCCCTAAAACCTCCGAGAATTTTTTAGCGCTATGTGCAAGTGGTTACTATGATGGGACTATATTTCACCGCAACATTAAGGGTTTTATGATTCAAGGTGGAGATCCAACTGGAACTGGCAAAGGGGGAACCAGTATATGGGGCAAGAAATTTAACGATGAGATAAGAGAATCTCTGAAGCACAATGCAAGAGGAATATTAGCAATGGCCAATAGTGGTCCAAATACTAATGGAAGCCAATTTTTCTTGACTTATGCAAAGCAGCCTCATTTAAATGGGCTATACACCGTGTTTGGCAAAGTAATTCATGGATTTGAAGTTCTTGATCTCATGGAGAAGACACAAACAGGGGCAGGGGACCGACCGCTTGCAGAGATAAGGCTCAATCGTGTAACAATACATGCTAATCCACTTGCTGGTTAG 483 0.4306 MSVTLHTNLGDIKCEIFCDEVPKTSENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILAMANSGPNTNGSQFFLTYAKQPHLNGLYTVFGKVIHGFEVLDLMEKTQTGAGDRPLAEIRLNRVTIHANPLAG 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01489 160 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 37 54 IPR020892 GO:0003755|GO:0006457
Gma01g01489 160 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 152 IPR002130 GO:0000413|GO:0003755
Gma01g01489 160 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 6 153 IPR002130 GO:0000413|GO:0003755
Gma01g01489 160 SUPERFAMILY Cyclophilin-like 1 157 IPR029000 -
Gma01g01489 160 PIRSF Peptidylpro_ismrse 1 157 IPR024936 GO:0003755
Gma01g01489 160 CDD Cyclophilin_PPIL3_like 1 153 - -
Gma01g01489 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Gma01g01489 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Gma01g01489 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 IPR002130 GO:0000413|GO:0003755
Gma01g01489 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 112 IPR002130 GO:0000413|GO:0003755
Gma01g01489 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413|GO:0003755
Gma01g01489 160 Gene3D - 1 160 IPR029000 -
Gma01g01489 160 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 3 2 159 - -
Gma01g01489 160 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 159 IPR044666 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01489 Gma-Chr1 50144922 50153626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01489 3 157 U-box Gene Family AT5G67530 52.903 6.89e-55 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01489 K12734 - gmx:100306466 328.561