Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01478 ATGAACCCAATGATGATCGAACCTGCAAACATTAGTTCTTCGTCATCCTTCAATATCAACCCCAAAATTGTTGAAGAAAGAATGGGTCCCTACAACATTCGTGTGATAAATGAACAAGTGGTGAAGCCCAATCCCAGAGATACATTGAGATTCAATGTGACTGTTACCCTTCGACAATTTTCAATTTATGACTGGCGTCTGCGTCTCATAAGAACCTCAACCTTGTTGGAAACTTCAACATCCATAAGCTTCCAAAGCTTGTTTGAAGATAATCAAGATTTTTTACGATCAGTATTATCCAACCCAGAATGTTTTCTCTACTTCATCCCAAGAAGTTTTGATCAAATATCACGGAATATTGTTTCCGTTGTTCAACGAGCCTTGGAGGTTCAGGGCTCCCCTTCTTCGGCTGAGTCTGCAGATTTCGAATGCGAAGTGTTCCCTTTGACTTTAGATATTTTCGTGGACATGCTGGAAGAAGTAGATGAAGAAACGCTTGCACTAATAGAAGAGGAGTCCATACAGCAAGAGGTCGCAATGATTCCAGCCTCCAATGAAGCCATACACTCCCTGCAAGCGTTCACAGATCCACTCTTCCTCAAGACTGAAAAGTGTAATATTTGCATGGATGAGTTTTATGCTGAAGAGGGTAATGAAGATGATGTCAAGTTATTGTCGTCTTCGTCAATGCCATGCGGTCATGTGTTTCATCATCAATGCATCGTGAAGTGGCTGCAAACCAGTCACACGTGTCCCTTGTGTCGCTACCCTATGCCCTCTGTCCACGACTAG 792 0.4255 MNPMMIEPANISSSSSFNINPKIVEERMGPYNIRVINEQVVKPNPRDTLRFNVTVTLRQFSIYDWRLRLIRTSTLLETSTSISFQSLFEDNQDFLRSVLSNPECFLYFIPRSFDQISRNIVSVVQRALEVQGSPSSAESADFECEVFPLTLDIFVDMLEEVDEETLALIEEESIQQEVAMIPASNEAIHSLQAFTDPLFLKTEKCNICMDEFYAEEGNEDDVKLLSSSSMPCGHVFHHQCIVKWLQTSHTCPLCRYPMPSVHD 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01478 263 SUPERFAMILY RING/U-box 204 260 - -
Gma01g01478 263 SMART ring_2 205 254 IPR001841 -
Gma01g01478 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 261 IPR013083 -
Gma01g01478 263 PANTHER F6A14.12 PROTEIN-RELATED 88 259 - -
Gma01g01478 263 SMART ringv_2 204 255 IPR011016 GO:0008270
Gma01g01478 263 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 88 259 - -
Gma01g01478 263 ProSiteProfiles Zinc finger RING-type profile. 205 255 IPR001841 -
Gma01g01478 263 Pfam Ring finger domain 204 255 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01478 Gma-Chr1 49928922 49929923 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01478 159 259 C3H Transcription Factor Family AT1G18760 31.373 2.07e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01478 - - gmx:102665306 497.278