Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01473 atggaagccagagaaggtattagttctggggttacagtgataggtgcagaagctccatcagcttaccatgtggcgccaaggagtgaagctccaaaccaggttcatgtccctgatggtggtggtgctgctgctacagctgcacctgttggtgtctcacctgtgagTGCGGGGTTGGATGGAACAGCAGTTAAGAAGAAACGGGGTAGGCCGAGGAAATATGGGCCTGATGGGTCAGTCACTATGGCATTGTCACCAATGCCAATTTCGTCGTCGGCTCCGCCTTCTAATGACTTTTCCTCCGGGAAGCGGGGGAAAATGCGGGGGATGGACTATAAGCCATCAAAAAAAGTTGGTTTGGATTATCTAGGTGACTTGAATGCATGCTCTGATGGTACAAATTTTATGCCGCATATCATCACTGTCAATGCTGGCGAGGACATCACGATGAAGGTGATATCCTTTTCTCAACAAGGACCACGAGCTATATGTATCTTATCTGCTAATGGTGTGATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGGGGTACTTTAACTTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGATAACCAAGGAACAAGAAGCAGGACTGGTGGAATGTCGGTCTCGTTGGCTAGCCCTGATGGCCGTGTTGTAGGTGGCGGAGTTGCTGGTCTTCTTGTAGCTGCCAGCCCTGTGCAGGTGGTGGTGGGAAGCTTTTTACCAAGCAGCCAGCAAGAACAGAAAATAAAGAAGTCAAAGTCTAGCGATTATGGAGTAGCAACTGTTACTCCAACCATTGCAGTGTCTCCTACACCACCACCTCCAACCAATGCCGAAAAAGAGGATGTGAATGTTATGGGTGGAGCACATGTACTGCAAAATTCTGGAACCCTCAACTCTAACCTCACTCCTCCCAATGCCTTTAGAAGAGACAACTGGGTCAACATGCACTCTATGCCAGACTCAAGAAAGTCAGCCACTGATATTAACATATCTTTGCCTGATAGTTAA 1041 0.3929 MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPDGGGAAATAAPVGVSPVSAGLDGTAVKKKRGRPRKYGPDGSVTMALSPMPISSSAPPSNDFSSGKRGKMRGMDYKPSKKVGLDYLGDLNACSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRTGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLPSSQQEQKIKKSKSSDYGVATVTPTIAVSPTPPPPTNAEKEDVNVMGGAHVLQNSGTLNSNLTPPNAFRRDNWVNMHSMPDSRKSATDINISLPDS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01473 346 Pfam Plants and Prokaryotes Conserved (PCC) domain 136 249 IPR005175 -
Gma01g01473 346 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 345 - -
Gma01g01473 346 ProSiteProfiles PPC domain profile profile. 131 275 IPR005175 -
Gma01g01473 346 CDD DUF296 136 226 IPR005175 -
Gma01g01473 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 345 IPR039605 GO:0003680
Gma01g01473 346 Gene3D - 136 268 - -
Gma01g01473 346 MobiDBLite consensus disorder prediction 83 98 - -
Gma01g01473 346 SUPERFAMILY AF0104/ALDC/Ptd012-like 134 254 - -
Gma01g01473 346 MobiDBLite consensus disorder prediction 24 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01473 Gma-Chr1 49845868 49853144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01473 10 279 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 58.586 1.28e-99 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01473 - - gmx:100796830 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01473 01 49845868 49853144 Gma01g01473 01 49845868 49853144 ECH
Gma18g02043 18 53787866 53791608 Gma01g01473 01 49845868 49853144 PCT
Gma09g02460 09 49961270 49964915 Gma01g01473 01 49845868 49853144 PCT
Gma01g01473 01 49845868 49853144 Gma18g02043 18 53787866 53791608 PCT
Gma01g01473 01 49845868 49853144 Gma09g02460 09 49961270 49964915 PCT