Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01462 ATGCGGAACTGGGGGAAATGGGTGTCAGAAATCCGCGAGCCGTGGAAGAAGTCGCGGATATGGCTAGGCACATTCCCAACGCCAGAAATGGCGGTGTGGGCGCACAACGTGGCGGCTCTTAGCATCAAAGGCTCCGCCGCCATTCTCAACTTCCTTCACTTTGCCAACTCGCTCCCTTGCCCAACTTATCTCACGCCGCAAGACGTTCAAGCCGCGGCGGCCAAAGTGGTGCACATGGACCCTTCTTCCCTCTCCTCCCTCGTAATTAAATTTTACCACTGCAAGGTAAAAAAAATGCAATGCTTTCCGGTGAACCACTCAGATGTTGACACATGGCAGTCAACGTCTGAGGTTAACGGTCAACGTTCAATTGGGACGTTCAGGACCAATTTTGCATAA 399 0.5238 MRNWGKWVSEIREPWKKSRIWLGTFPTPEMAVWAHNVAALSIKGSAAILNFLHFANSLPCPTYLTPQDVQAAAAKVVHMDPSSLSSLVIKFYHCKVKKMQCFPVNHSDVDTWQSTSEVNGQRSIGTFRTNFA 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01462 132 ProSiteProfiles AP2/ERF domain profile. 1 52 IPR001471 GO:0003700|GO:0006355
Gma01g01462 132 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 98 - -
Gma01g01462 132 Pfam AP2 domain 3 44 IPR001471 GO:0003700|GO:0006355
Gma01g01462 132 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042 1 98 - -
Gma01g01462 132 SMART rav1_2 1 58 IPR001471 GO:0003700|GO:0006355
Gma01g01462 132 CDD AP2 1 51 IPR001471 GO:0003700|GO:0006355
Gma01g01462 132 Gene3D AP2/ERF domain 1 53 IPR036955 GO:0003700|GO:0006355
Gma01g01462 132 SUPERFAMILY DNA-binding domain 2 52 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01462 Gma-Chr1 49717749 49718147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01462 1 81 AP2-EREBP Transcription Factor Family AT5G11590 74.074 1.01e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma01g01462 AP2 6.2e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01462 K09286 - gmx:100786075 278.87