Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01436 ATGTTTACTGATGAGGACTTTAAAGAGCTAAGCAAGGTGAAGAGTGTCACTGGAAGCAAGATTCTTCGTATATTGAAGGCTCACAGGCTTGCTCCTGAAATTTCGAAAGATTTGTATCACCTCATCAAGAAGGTTGTTTATATTAGGAAGCACTTGGAGAGGAACAAGAAGGACAAGGATTCTAAATTCAAGTTAATTTTGGTTGAGAGTAGGATTCACCGACTTGCCCATTACTATAAGAAGACAAAGAAGCTTCCACCTGTGTGGAAATAG 273 0.3919 MFTDEDFKELSKVKSVTGSKILRILKAHRLAPEISKDLYHLIKKVVYIRKHLERNKKDKDSKFKLILVESRIHRLAHYYKKTKKLPPVWK 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01436 90 PANTHER - 6 90 - -
Gma01g01436 90 PANTHER RIBOSOMAL PROTEIN S15P/S13E 6 90 IPR023029 -
Gma01g01436 90 SUPERFAMILY S15/NS1 RNA-binding domain 16 89 IPR009068 -
Gma01g01436 90 Gene3D - 33 90 - -
Gma01g01436 90 CDD Ribosomal_S15p_S13e 20 90 IPR000589 GO:0003735|GO:0005840|GO:0006412
Gma01g01436 90 SMART Ribosomal_S15_2 20 90 IPR000589 GO:0003735|GO:0005840|GO:0006412
Gma01g01436 90 Pfam Ribosomal protein S15 25 84 IPR000589 GO:0003735|GO:0005840|GO:0006412
Gma01g01436 90 ProSitePatterns Ribosomal protein S15 signature. 48 78 IPR000589 GO:0003735|GO:0005840|GO:0006412
Gma01g01436 90 Gene3D - 6 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01436 Gma-Chr1 49181538 49183938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01436 6 90 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 83.529 2.22e-45 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01436 K02953 - gmx:100775368 160.614