Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01374 ATGGAGAAGCACAAGTGCAAGCTTTGCTTGCGGAGTTTCGCGAACGGAAGAGCGTTGGGAGGTCACATGCGGTCTCACATGCTGAACCTACCTGTTCCTCCGAAACAGAGCGAGTTCGTGCCGATTCAACTCAGCTTCGAGGCCGACTCATCTCCTTCGCAGTCTTCATCTTCCTTCTACGGTCTCAGAGAGAATCCGAAGAAGAGCTTTCGTTTCGCAGATCCTGAATTTGCGTTTGCAGCAGCAGACACGGGCTCGGTGATCCTGCAGGACAGGGAGAGCGAGACCGAGTCGTCGAGGAATCCGACTAGGACACGATCCAAGAGAGCGTGGCAACTCGGTGGCGACGGTGGTGGCGGTGGCGGCGGTTCAGGTGAATCAGAAAAAAAGATTATGAAAGTTTGTAAAATTAGTAAAACTAACGAATCTGCAAGTTCGGTTTCGGACACGACGAGGGAGGAAGACGTCGCATTCTGTCTCATGATGCTGTCTCGCGACAAGTGGAAGGAGGAAAATATTAACAATTTATTATatgatcatgatcaggatgatgatgaagacgaggaggacgatgaagaagacgaaaacaatgaggacgatgacggttacgaATCGGAAGAGAAGTCTCTTAAGAAGAGCAACAACAAGGTGCGAGGGAGGTACAAATGCGAGACGTGTGAAAAGGTGTTTCGATCTTACCAGGCTCTCGGAGGACACCGCGCCAGTCACAAGAAGATCAAGCTcaacaacaacaacaacaacaacaacaacaacgaaggtgaactcgaagttcagcacgttgttgtggagaagaaaatcCACGAATGTCCTGTTTGTTTCCGAGTATTCGCTTCCGGTCAGGCTCTGGGTGGACACAAGAGAACACATGTGATTGGTTCTTCAACTGCTGCAACAACCGTTTCTGTTAGAAGTTCTGTTGCAACGGTTTCGGTTAGAACAGCTTCTACTACTAGAGTTGGAGATAGTTTGATAGATCTCAATCTTCCTGCTCCAGTGGATGATGATGAAGAGGAGGAGGAGGATGTTAGTCAGTTCGACGACTCAGCTGTTTCGGATGCAGAGTTTGTTAAACTGTGA 1098 0.4226 MEKHKCKLCLRSFANGRALGGHMRSHMLNLPVPPKQSEFVPIQLSFEADSSPSQSSSSFYGLRENPKKSFRFADPEFAFAAADTGSVILQDRESETESSRNPTRTRSKRAWQLGGDGGGGGGGSGESEKKIMKVCKISKTNESASSVSDTTREEDVAFCLMMLSRDKWKEENINNLLYDHDQDDDEDEEDDEEDENNEDDDGYESEEKSLKKSNNKVRGRYKCETCEKVFRSYQALGGHRASHKKIKLNNNNNNNNNNEGELEVQHVVVEKKIHECPVCFRVFASGQALGGHKRTHVIGSSTAATTVSVRSSVATVSVRTASTTRVGDSLIDLNLPAPVDDDEEEEEDVSQFDDSAVSDAEFVKL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01374 365 Gene3D Classic Zinc Finger 218 296 - -
Gma01g01374 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 221 248 IPR013087 -
Gma01g01374 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 274 296 IPR013087 -
Gma01g01374 365 MobiDBLite consensus disorder prediction 88 127 - -
Gma01g01374 365 MobiDBLite consensus disorder prediction 177 214 - -
Gma01g01374 365 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Gma01g01374 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Gma01g01374 365 MobiDBLite consensus disorder prediction 337 354 - -
Gma01g01374 365 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 365 IPR044303 GO:0006355
Gma01g01374 365 ProSitePatterns Zinc finger C2H2 type domain signature. 276 296 IPR013087 -
Gma01g01374 365 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 365 - -
Gma01g01374 365 SUPERFAMILY beta-beta-alpha zinc fingers 220 296 IPR036236 -
Gma01g01374 365 MobiDBLite consensus disorder prediction 333 365 - -
Gma01g01374 365 SMART c2h2final6 221 243 IPR013087 -
Gma01g01374 365 SMART c2h2final6 4 26 IPR013087 -
Gma01g01374 365 SMART c2h2final6 274 296 IPR013087 -
Gma01g01374 365 Pfam C2H2-type zinc finger 220 245 - -
Gma01g01374 365 Pfam C2H2-type zinc finger 274 296 - -
Gma01g01374 365 Pfam C2H2-type zinc finger 4 27 - -
Gma01g01374 365 ProSitePatterns Zinc finger C2H2 type domain signature. 223 243 IPR013087 -
Gma01g01374 365 MobiDBLite consensus disorder prediction 180 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01374 Gma-Chr1 47694818 47695915 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01374 1 343 C2H2 Transcription Factor Family AT3G60580 44.915 3.49e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma01g01374 zf-C2H2_6 2.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01374 - - gmx:100776462 593.193