Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01373 ATGAGGGCTCATGGCATAGGAGATGAAAGTGGTCACATGGATGATGATGACCAAGCAAGTGATTGGGAAGATAGGTTGGGTGGAAATGTGCCACCAAGCAACAAACGCATGTATGCCTTAAGAACAAACCCTAATAGACTAAAGAGCTGTAGGGTGTGTGAGAATTGTGGCAAAGAGTTCTTGTCATGGAAATCTTTCCTTGAACATGGAAAATGCACCTCTGAGGATGCCGAGTCCTTGGTCTCGTGTCCTGGATCCGATGCCGACGATGGCGGCATCGGCAGTGGCCGGAGAGGATGTGGCTGGTCCAAAAGGAAAAGGTCATTGAGAACTAAGGTTGGTAGCTTCAATTACAATTGCCCATCAAGCGAGGAAGAAGACCTTGCAAATTGTTTAATGATGTTATCCAATGCCATTGTAGATCCTCTTATAGCCGAGCCAGAAGAATCTTGTGCATCGGCTAGCAAAGAGGAGGAACAACGAAGAAATCCCATGAACTTCATTGCACCATTGTCATACAAAATCAACAACAACAACCAGCACCTTGTTGATAACAAGGCCAAAGGGGTTGCCAAGGGCTTGTTTGAATGCAAAGCATGCAAGAAGGTTTTCAATTCCCACCAAGCATTGGGTGGCCATAGAGCAAGCCACAAAAAGGTCAAGGGTTGTTTTGCTGCAAAGCTAGACAACCTTGATGACAATATCATGGAGGATGATGTCATCACACATGAAGAGTTCTTCCCAACAAAATCAAACTCCACCCTCCAATTTGACCATGGAAGCTCCAATCCCTCATTGGCCTCTTCCTCTAAGAGAAAACCCAAAGTGCATGAATGCTCCATTTGCCACAGGAGCTTCTCTTCAGGACAAGCATTAGGGGGACACAAAAGGTGCCATTGGATCACATCAAATGCTCCTGACACCTCCACATTAACAAGATTTCAACCATTTCAAGAGCACTTGGATCAAATACCCAAATTTGATACCTCTTCTGAGCCTCTTGATCTCAAATTAGACCTTAACCTTCCTGCACCATCCAATGACCTTGCAAGAAGGAATGTGTCTTCGGAATTTTACTTGCGGCCTTGGGTTGCATCAAAGGATGCTAAAGATGATAACAAAAATAGCCAGTGTCAAAGTCTCCACAACCCTAATAACAATCTTGATATTGACAATGATGAGGACAAAAACAACAACAACTCAATGCAAAACATGGACAATGAAGGTGATAGTAAGATCAAGTTGGCGAAACTGAGTGAGCTAAAGGACATGAACACTGGTGGCAGTTCTTTGCCATGGTTGCAGGTGGGAATCGGTTCAACTGCTACTGATGTGGAAACTGATAACTGCTGA 1353 0.4427 MRAHGIGDESGHMDDDDQASDWEDRLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDAESLVSCPGSDADDGGIGSGRRGCGWSKRKRSLRTKVGSFNYNCPSSEEEDLANCLMMLSNAIVDPLIAEPEESCASASKEEEQRRNPMNFIAPLSYKINNNNQHLVDNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAAKLDNLDDNIMEDDVITHEEFFPTKSNSTLQFDHGSSNPSLASSSKRKPKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLTRFQPFQEHLDQIPKFDTSSEPLDLKLDLNLPAPSNDLARRNVSSEFYLRPWVASKDAKDDNKNSQCQSLHNPNNNLDIDNDEDKNNNNSMQNMDNEGDSKIKLAKLSELKDMNTGGSSLPWLQVGIGSTATDVETDNC 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01373 450 SUPERFAMILY beta-beta-alpha zinc fingers 194 299 IPR036236 -
Gma01g01373 450 MobiDBLite consensus disorder prediction 252 270 - -
Gma01g01373 450 SMART c2h2final6 277 299 IPR013087 -
Gma01g01373 450 SMART c2h2final6 195 217 IPR013087 -
Gma01g01373 450 Pfam C2H2-type zinc finger 276 301 - -
Gma01g01373 450 Pfam C2H2-type zinc finger 195 219 - -
Gma01g01373 450 MobiDBLite consensus disorder prediction 1 37 - -
Gma01g01373 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 195 222 IPR013087 -
Gma01g01373 450 Gene3D Classic Zinc Finger 192 299 - -
Gma01g01373 450 MobiDBLite consensus disorder prediction 369 407 - -
Gma01g01373 450 MobiDBLite consensus disorder prediction 1 23 - -
Gma01g01373 450 ProSitePatterns Zinc finger C2H2 type domain signature. 197 217 IPR013087 -
Gma01g01373 450 PANTHER OS02G0659100 PROTEIN 1 447 - -
Gma01g01373 450 MobiDBLite consensus disorder prediction 252 271 - -
Gma01g01373 450 PANTHER OS02G0659100 PROTEIN 1 447 - -
Gma01g01373 450 ProSitePatterns Zinc finger C2H2 type domain signature. 279 299 IPR013087 -
Gma01g01373 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 277 299 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01373 Gma-Chr1 47668895 47670247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01373 104 342 C2H2 Transcription Factor Family AT1G02040 35.246 1.16e-31 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma01g01373 zf-C2H2_6 1.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01373 - - gmx:100793846 868.611